dataimport/massive_store.py
author Julien Cristau <julien.cristau@logilab.fr>
Wed, 21 Oct 2015 20:17:44 +0200
changeset 10856 b839167d99a4
parent 10855 cd91f46fa633
child 10859 375a8232e61c
permissions -rw-r--r--
[dataimport] dict.iteritems() → dict.items()
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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# coding: utf-8
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# copyright 2015 LOGILAB S.A. (Paris, FRANCE), all rights reserved.
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# contact http://www.logilab.fr/ -- mailto:contact@logilab.fr
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#
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# This file is part of CubicWeb.
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#
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# CubicWeb is free software: you can redistribute it and/or modify it under the
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# terms of the GNU Lesser General Public License as published by the Free
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# Software Foundation, either version 2.1 of the License, or (at your option)
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# any later version.
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#
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# CubicWeb is distributed in the hope that it will be useful, but WITHOUT ANY
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# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
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# A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more
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# details.
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#
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# You should have received a copy of the GNU Lesser General Public License along
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# with CubicWeb.  If not, see <http://www.gnu.org/licenses/>.
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import logging
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from datetime import datetime
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from collections import defaultdict
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f437787d8849 [dataimport] import StringIO from io
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from io import StringIO
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from yams.constraints import SizeConstraint
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from psycopg2 import ProgrammingError
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from cubicweb.dataimport import stores, pgstore
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from cubicweb.utils import make_uid
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from cubicweb.server.sqlutils import SQL_PREFIX
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class MassiveObjectStore(stores.RQLObjectStore):
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    """
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    Store for massive import of data, with delayed insertion of meta data.
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    WARNINGS:
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   - This store may be only used with PostgreSQL for now, as it relies
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     on the COPY FROM method, and on specific PostgreSQL tables to get all
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     the indexes.
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   - This store can only insert relations that are not inlined (i.e.,
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     which do *not* have inlined=True in their definition in the schema).
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   It should be used as follows:
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       store = MassiveObjectStore(cnx)
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       store.init_rtype_table('Person', 'lives_in', 'Location')
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       ...
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       store.create_entity('Person', subj_iid_attribute=person_iid, ...)
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       store.create_entity('Location', obj_iid_attribute=location_iid, ...)
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       ...
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       # subj_iid_attribute and obj_iid_attribute are argument names
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       # chosen by the user (e.g. "cwuri"). These names can be identical.
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       # person_iid and location_iid are unique IDs and depend on the data
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       # (e.g URI).
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       store.flush()
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       store.relate_by_iid(person_iid, 'lives_in', location_iid)
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       # For example:
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       store.create_entity('Person',
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                           cwuri='http://dbpedia.org/toto',
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                           name='Toto')
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       store.create_entity('Location',
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                           uri='http://geonames.org/11111',
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                           name='Somewhere')
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       store.flush()
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       store.relate_by_iid('http://dbpedia.org/toto',
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                       'lives_in',
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                       'http://geonames.org/11111')
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       # Finally
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       store.flush_meta_data()
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       store.convert_relations('Person', 'lives_in', 'Location',
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                               'subj_iid_attribute', 'obj_iid_attribute')
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       # For the previous example:
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       store.convert_relations('Person', 'lives_in', 'Location', 'cwuri', 'uri')
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       ...
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       store.cleanup()
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    """
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    def __init__(self, cnx, autoflush_metadata=True,
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                 replace_sep='', commit_at_flush=True,
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                 drop_index=True,
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                 pg_schema='public',
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                 iid_maxsize=1024, uri_param_name='rdf:about',
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                 eids_seq_range=10000, eids_seq_start=None,
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                 on_commit_callback=None, on_rollback_callback=None,
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                 slave_mode=False, build_entities=False,
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                 source=None):
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        """ Create a MassiveObject store, with the following attributes:
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        - cnx: CubicWeb cnx
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        - autoflush_metadata: Boolean.
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                              Automatically flush the metadata after
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                              each flush()
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        - replace_sep: String. Replace separator used for
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                       (COPY FROM) buffer creation.
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        - commit_at_flush: Boolean. Commit after each flush().
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        - drop_index: Boolean. Drop SQL index before COPY FROM
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        - eids_seq_range: Int. Range of the eids_seq_range to be fetched each time
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                               by the store (default is 10000).
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                               If None, the sequence eids is attached to each entity tables
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                               (backward compatibility with the 0.2.0).
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        - eids_seq_start: Int. Set the eids sequence value (if None, nothing is done).
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        - iid_maxsize: Int. Max size of the iid, used to create the
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                    iid_eid convertion table.
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        - uri_param_name: String. If given, will use this parameter to get cw_uri
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                          for entities.
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        - build_entities: Boolean. If True, create_entity returns a CW etype object
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          (but WITHOUT eid !).
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        """
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        super(MassiveObjectStore, self).__init__(cnx)
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        self.logger = logging.getLogger('dataio.relationmixin')
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        self._cnx = cnx
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        self.sql = cnx.system_sql
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        self.iid_maxsize = iid_maxsize
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        self.replace_sep = replace_sep
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        self.commit_at_flush = commit_at_flush
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        self._data_uri_relations = defaultdict(list)
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        self._initialized = {'init_uri_eid': set(),
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                             'uri_eid_inserted': set(),
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                             'uri_rtypes': set(),
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                             'entities': set(),
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                             'rtypes': set(),
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                            }
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        self.sql = self._cnx.system_sql
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        self.logger = logging.getLogger('dataio.massiveimport')
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        self.autoflush_metadata = autoflush_metadata
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        self.replace_sep = replace_sep
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        self.drop_index = drop_index
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        self.slave_mode = slave_mode
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        self.size_constraints = get_size_constraints(cnx.vreg.schema)
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        self.default_values = get_default_values(cnx.vreg.schema)
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        self._dbh = PGHelper(self._cnx, pg_schema or 'public')
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        self._build_entities = build_entities
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        self._data_entities = defaultdict(list)
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        self._data_relations = defaultdict(list)
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        self._now = datetime.now()
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        self._default_cwuri = make_uid('_auto_generated')
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        self.uri_param_name = uri_param_name
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        self._count_cwuri = 0
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        self.commit_at_flush = commit_at_flush
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        self.on_commit_callback = on_commit_callback
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        self.on_rollback_callback = on_rollback_callback
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        # Initialized the meta tables of dataio for warm restart
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        self._init_dataio_metatables()
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        # Internal markers of initialization
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        self._eids_seq_range = eids_seq_range
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        self._eids_seq_start = eids_seq_start
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        if self._eids_seq_start is not None:
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            self._cnx.system_sql(self._cnx.repo.system_source.dbhelper.sql_restart_numrange(
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                'entities_id_seq', initial_value=self._eids_seq_start + 1))
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            cnx.commit()
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cd91f46fa633 [dataimport] use next builtin instead of next method on iterators
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   156
        self.get_next_eid = lambda g=self._get_eid_gen(): next(g)
10853
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        # recreate then when self.cleanup() is called
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        if not self.slave_mode and self.drop_index:
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            self._drop_metatables_constraints()
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   160
        if source is None:
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            source = cnx.repo.system_source
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   162
        self.source = source
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   163
        self._etype_eid_idx = dict(cnx.execute('Any XN,X WHERE X is CWEType, X name XN'))
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        cnx.read_security = False
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        cnx.write_security = False
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   166
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    ### INIT FUNCTIONS ########################################################
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    def init_rtype_table(self, etype_from, rtype, etype_to):
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        """ Build temporary table a for standard rtype """
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        # Create an uri_eid table for each etype for a better
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        # control of which etype is concerns for a particular
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        # possibly multivalued relation.
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   174
        for etype in (etype_from, etype_to):
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   175
            if etype and etype not in self._initialized['init_uri_eid']:
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   176
                self._init_uri_eid_table(etype)
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   177
        if rtype not in self._initialized['uri_rtypes']:
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   178
            # Create the temporary tables
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   179
            if not self._cnx.repo.schema.rschema(rtype).inlined:
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   180
                try:
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   181
                    sql = 'CREATE TABLE %(r)s_relation_iid_tmp (uri_from character ' \
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                          'varying(%(s)s), uri_to character varying(%(s)s))'
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   183
                    self.sql(sql % {'r': rtype, 's': self.iid_maxsize})
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   184
                except ProgrammingError:
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   185
                    # XXX Already exist (probably due to multiple import)
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   186
                    pass
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   187
            else:
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   188
                self.logger.warning("inlined relation %s: cannot insert it", rtype)
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   189
            #Add it to the initialized set
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   190
            self._initialized['uri_rtypes'].add(rtype)
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   191
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   192
    def _init_uri_eid_table(self, etype):
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   193
        """ Build a temporary table for id/eid convertion
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   194
        """
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   195
        try:
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   196
            sql = "CREATE TABLE uri_eid_%(e)s (uri character varying(%(size)s), eid integer)"
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   197
            self.sql(sql % {'e': etype.lower(), 'size': self.iid_maxsize,})
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   198
        except ProgrammingError:
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   199
            # XXX Already exist (probably due to multiple import)
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   200
            pass
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   201
        # Add it to the initialized set
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   202
        self._initialized['init_uri_eid'].add(etype)
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   203
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   204
    def _init_dataio_metatables(self):
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        """ Initialized the meta tables of dataio for warm restart
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   206
        """
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   207
        # Check if dataio tables are not already created (i.e. a restart)
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   208
        self._initialized_table_created = self._dbh.table_exists('dataio_initialized')
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   209
        self._constraint_table_created = self._dbh.table_exists('dataio_constraints')
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   210
        self._metadata_table_created = self._dbh.table_exists('dataio_metadata')
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   211
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    ### RELATE FUNCTION #######################################################
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   213
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   214
    def relate_by_iid(self, iid_from, rtype, iid_to):
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   215
        """Add new relation based on the internal id (iid)
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   216
        of the entities (not the eid)"""
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   217
        # Push data
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   218
        if isinstance(iid_from, unicode):
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   219
            iid_from = iid_from.encode('utf-8')
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   220
        if isinstance(iid_to, unicode):
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   221
            iid_to = iid_to.encode('utf-8')
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   222
        self._data_uri_relations[rtype].append({'uri_from': iid_from, 'uri_to': iid_to})
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   223
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   224
    ### FLUSH FUNCTIONS #######################################################
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   225
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   226
    def flush_relations(self):
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        """ Flush the relations data
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        """
10856
b839167d99a4 [dataimport] dict.iteritems() → dict.items()
Julien Cristau <julien.cristau@logilab.fr>
parents: 10855
diff changeset
   229
        for rtype, data in self._data_uri_relations.items():
10853
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   230
            if not data:
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                self.logger.info('No data for rtype %s', rtype)
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            buf = StringIO('\n'.join(['%(uri_from)s\t%(uri_to)s' % d for d in data]))
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   233
            if not buf:
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   234
                self.logger.info('Empty Buffer for rtype %s', rtype)
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                continue
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            cursor = self._cnx.cnxset.cu
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   237
            if not self._cnx.repo.schema.rschema(rtype).inlined:
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   238
                cursor.copy_from(buf, '%s_relation_iid_tmp' % rtype.lower(),
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                                 null='NULL', columns=('uri_from', 'uri_to'))
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            else:
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                self.logger.warning("inlined relation %s: cannot insert it", rtype)
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            buf.close()
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            # Clear data cache
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   244
            self._data_uri_relations[rtype] = []
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            # Commit if asked
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   246
            if self.commit_at_flush:
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                self.commit()
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   248
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    def fill_uri_eid_table(self, etype, uri_label):
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        """ Fill the uri_eid table
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        """
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        self.logger.info('Fill uri_eid for etype %s', etype)
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        sql = 'INSERT INTO uri_eid_%(e)s SELECT cw_%(l)s, cw_eid FROM cw_%(e)s'
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        self.sql(sql % {'l': uri_label, 'e': etype.lower()})
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        # Add indexes
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        self.sql('CREATE INDEX uri_eid_%(e)s_idx ON uri_eid_%(e)s' '(uri)' % {'e': etype.lower()})
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        # Set the etype as converted
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   258
        self._initialized['uri_eid_inserted'].add(etype)
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   259
        self.commit()
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   260
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   261
    def convert_relations(self, etype_from, rtype, etype_to,
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   262
                          uri_label_from='cwuri', uri_label_to='cwuri'):
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parents:
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   263
        """ Flush the converted relations
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   264
        """
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   265
        # Always flush relations to be sure
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   266
        self.logger.info('Convert relations %s %s %s', etype_from, rtype, etype_to)
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   267
        self.flush_relations()
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   268
        if uri_label_from and etype_from not in self._initialized['uri_eid_inserted']:
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parents:
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   269
            self.fill_uri_eid_table(etype_from, uri_label_from)
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parents:
diff changeset
   270
        if uri_label_to and etype_to not in self._initialized['uri_eid_inserted']:
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parents:
diff changeset
   271
            self.fill_uri_eid_table(etype_to, uri_label_to)
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parents:
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   272
        if self._cnx.repo.schema.rschema(rtype).inlined:
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   273
            self.logger.warning("Can't insert inlined relation %s", rtype)
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   274
            return
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   275
        if uri_label_from and uri_label_to:
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parents:
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   276
            sql = '''INSERT INTO %(r)s_relation (eid_from, eid_to) SELECT DISTINCT O1.eid, O2.eid
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   277
            FROM %(r)s_relation_iid_tmp AS T, uri_eid_%(ef)s as O1, uri_eid_%(et)s as O2
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   278
            WHERE O1.uri=T.uri_from AND O2.uri=T.uri_to AND NOT EXISTS (
de741492538d [dataimport] backport massive store from dataio cube
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   279
            SELECT 1 FROM %(r)s_relation AS TT WHERE TT.eid_from=O1.eid AND TT.eid_to=O2.eid);
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   280
            '''
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diff changeset
   281
        elif uri_label_to:
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diff changeset
   282
            sql = '''INSERT INTO %(r)s_relation (eid_from, eid_to) SELECT DISTINCT
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diff changeset
   283
            CAST(T.uri_from AS INTEGER), O1.eid
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parents:
diff changeset
   284
            FROM %(r)s_relation_iid_tmp AS T, uri_eid_%(et)s as O1
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diff changeset
   285
            WHERE O1.uri=T.uri_to AND NOT EXISTS (
de741492538d [dataimport] backport massive store from dataio cube
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diff changeset
   286
            SELECT 1 FROM %(r)s_relation AS TT WHERE
de741492538d [dataimport] backport massive store from dataio cube
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diff changeset
   287
            TT.eid_from=CAST(T.uri_from AS INTEGER) AND TT.eid_to=O1.eid);
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diff changeset
   288
            '''
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diff changeset
   289
        elif uri_label_from:
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parents:
diff changeset
   290
            sql = '''INSERT INTO %(r)s_relation (eid_from, eid_to) SELECT DISTINCT O1.eid, T.uri_to
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   291
            O1.eid, CAST(T.uri_to AS INTEGER)
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parents:
diff changeset
   292
            FROM %(r)s_relation_iid_tmp AS T, uri_eid_%(ef)s as O1
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parents:
diff changeset
   293
            WHERE O1.uri=T.uri_from AND NOT EXISTS (
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   294
            SELECT 1 FROM %(r)s_relation AS TT WHERE
de741492538d [dataimport] backport massive store from dataio cube
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diff changeset
   295
            TT.eid_from=O1.eid AND TT.eid_to=CAST(T.uri_to AS INTEGER));
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diff changeset
   296
            '''
de741492538d [dataimport] backport massive store from dataio cube
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   297
        try:
de741492538d [dataimport] backport massive store from dataio cube
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diff changeset
   298
            self.sql(sql % {'r': rtype.lower(),
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diff changeset
   299
                            'et': etype_to.lower() if etype_to else u'',
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diff changeset
   300
                            'ef': etype_from.lower() if etype_from else u''})
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parents:
diff changeset
   301
        except Exception as ex:
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diff changeset
   302
            self.logger.error("Can't insert relation %s: %s", rtype, ex)
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parents:
diff changeset
   303
        self.commit()
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parents:
diff changeset
   304
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diff changeset
   305
    ### SQL UTILITIES #########################################################
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parents:
diff changeset
   306
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diff changeset
   307
    def drop_and_store_indexes_constraints(self, tablename):
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   308
        # Drop indexes and constraints
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parents:
diff changeset
   309
        if not self._constraint_table_created:
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parents:
diff changeset
   310
            # Create a table to save the constraints
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parents:
diff changeset
   311
            # Allow reload even after crash
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parents:
diff changeset
   312
            sql = "CREATE TABLE dataio_constraints (origtable text, query text, type varchar(256))"
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   313
            self.sql(sql)
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parents:
diff changeset
   314
            self._constraint_table_created = True
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parents:
diff changeset
   315
        self._drop_table_constraints_indexes(tablename)
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Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   316
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   317
    def _drop_table_constraints_indexes(self, tablename):
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parents:
diff changeset
   318
        """ Drop and store table constraints and indexes """
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parents:
diff changeset
   319
        indexes, constraints = self._dbh.application_indexes_constraints(tablename)
10856
b839167d99a4 [dataimport] dict.iteritems() → dict.items()
Julien Cristau <julien.cristau@logilab.fr>
parents: 10855
diff changeset
   320
        for name, query in constraints.items():
10853
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   321
            sql = 'INSERT INTO dataio_constraints VALUES (%(e)s, %(c)s, %(t)s)'
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   322
            self.sql(sql, {'e': tablename, 'c': query, 't': 'constraint'})
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   323
            sql = 'ALTER TABLE %s DROP CONSTRAINT %s CASCADE' % (tablename, name)
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   324
            self.sql(sql)
10856
b839167d99a4 [dataimport] dict.iteritems() → dict.items()
Julien Cristau <julien.cristau@logilab.fr>
parents: 10855
diff changeset
   325
        for name, query in indexes.items():
10853
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   326
            sql = 'INSERT INTO dataio_constraints VALUES (%(e)s, %(c)s, %(t)s)'
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   327
            self.sql(sql, {'e': tablename, 'c': query, 't': 'index'})
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   328
            sql = 'DROP INDEX %s' % name
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parents:
diff changeset
   329
            self.sql(sql)
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parents:
diff changeset
   330
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   331
    def reapply_constraint_index(self, tablename):
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   332
        if not self._dbh.table_exists('dataio_constraints'):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   333
            self.logger.info('The table dataio_constraints does not exist '
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   334
                             '(keep_index option should be True)')
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   335
            return
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   336
        sql = 'SELECT query FROM dataio_constraints WHERE origtable = %(e)s'
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   337
        crs = self.sql(sql, {'e': tablename})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   338
        for query, in crs.fetchall():
de741492538d [dataimport] backport massive store from dataio cube
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parents:
diff changeset
   339
            self.sql(query)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   340
            self.sql('DELETE FROM dataio_constraints WHERE origtable = %(e)s '
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   341
                     'AND query = %(q)s', {'e': tablename, 'q': query})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   342
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   343
    def _drop_metatables_constraints(self):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   344
        """ Drop all the constraints for the meta data"""
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   345
        for tablename in ('created_by_relation', 'owned_by_relation',
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   346
                          'is_instance_of_relation', 'identity_relation',
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   347
                          'entities'):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   348
            self.drop_and_store_indexes_constraints(tablename)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   349
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   350
    def _create_metatables_constraints(self):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   351
        """ Create all the constraints for the meta data"""
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   352
        for tablename in ('entities',
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   353
                          'created_by_relation', 'owned_by_relation',
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   354
                          'is_instance_of_relation', 'identity_relation'):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   355
            # Indexes and constraints
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   356
            if self.drop_index:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   357
                self.reapply_constraint_index(tablename)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   358
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   359
    def init_relation_table(self, rtype):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   360
        """ Get and remove all indexes for performance sake """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   361
        # Create temporary table
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   362
        if not self.slave_mode and rtype not in self._initialized['rtypes']:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   363
            sql = "CREATE TABLE %s_relation_tmp (eid_from integer, eid_to integer)" % rtype.lower()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   364
            self.sql(sql)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   365
            if self.drop_index:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   366
                # Drop indexes and constraints
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   367
                tablename = '%s_relation' % rtype.lower()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   368
                self.drop_and_store_indexes_constraints(tablename)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   369
            # Push the etype in the initialized table for easier restart
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   370
            self.init_create_initialized_table()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   371
            sql = 'INSERT INTO dataio_initialized VALUES (%(e)s, %(t)s)'
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   372
            self.sql(sql, {'e': rtype, 't': 'rtype'})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   373
            # Mark rtype as "initialized" for faster check
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   374
            self._initialized['rtypes'].add(rtype)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   375
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   376
    def init_create_initialized_table(self):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   377
        """ Create the dataio initialized table
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   378
        """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   379
        if not self._initialized_table_created:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   380
            sql = "CREATE TABLE dataio_initialized (retype text, type varchar(128))"
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   381
            self.sql(sql)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   382
            self._initialized_table_created = True
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   383
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   384
    def init_etype_table(self, etype):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   385
        """ Add eid sequence to a particular etype table and
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   386
        remove all indexes for performance sake """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   387
        if etype not in self._initialized['entities']:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   388
            # Only for non-initialized etype and not slave mode store
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   389
            if not self.slave_mode:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   390
                if self._eids_seq_range is None:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   391
                    # Eids are directly set by the entities_id_seq.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   392
                    # We attach this sequence to all the created etypes.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   393
                    sql = ("ALTER TABLE cw_%s ALTER COLUMN cw_eid "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   394
                           "SET DEFAULT nextval('entities_id_seq')" % etype.lower())
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   395
                    self.sql(sql)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   396
                if self.drop_index:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   397
                    # Drop indexes and constraints
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   398
                    tablename = 'cw_%s' % etype.lower()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   399
                    self.drop_and_store_indexes_constraints(tablename)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   400
                # Push the etype in the initialized table for easier restart
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   401
                self.init_create_initialized_table()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   402
                sql = 'INSERT INTO dataio_initialized VALUES (%(e)s, %(t)s)'
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   403
                self.sql(sql, {'e': etype, 't': 'etype'})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   404
            # Mark etype as "initialized" for faster check
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   405
            self._initialized['entities'].add(etype)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   406
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   407
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   408
    ### ENTITIES CREATION #####################################################
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   409
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   410
    def _get_eid_gen(self):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   411
        """ Function getting the next eid. This is done by preselecting
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   412
        a given number of eids from the 'entities_id_seq', and then
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   413
        storing them"""
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   414
        while True:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   415
            last_eid = self._cnx.repo.system_source.create_eid(self._cnx, self._eids_seq_range)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   416
            for eid in xrange(last_eid - self._eids_seq_range + 1, last_eid + 1):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   417
                yield eid
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   418
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   419
    def apply_size_constraints(self, etype, kwargs):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   420
        """ Apply the size constraints for a given etype, attribute and value
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   421
        """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   422
        size_constraints = self.size_constraints[etype]
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   423
        for attr, value in kwargs.items():
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   424
            if value:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   425
                maxsize = size_constraints.get(attr)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   426
                if maxsize is not None and len(value) > maxsize:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   427
                    kwargs[attr] = value[:maxsize-4] + '...'
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   428
        return kwargs
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   429
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   430
    def apply_default_values(self, etype, kwargs):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   431
        """ Apply the default values for a given etype, attribute and value
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   432
        """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   433
        default_values = self.default_values[etype]
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   434
        missing_keys = set(default_values) - set(kwargs)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   435
        kwargs.update((key, default_values[key]) for key in missing_keys)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   436
        return kwargs
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   437
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   438
    def create_entity(self, etype, **kwargs):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   439
        """ Create an entity
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   440
        """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   441
        # Init the table if necessary
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   442
        self.init_etype_table(etype)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   443
        # Add meta data if not given
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   444
        if 'modification_date' not in kwargs:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   445
            kwargs['modification_date'] = self._now
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   446
        if 'creation_date' not in kwargs:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   447
            kwargs['creation_date'] = self._now
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   448
        if 'cwuri' not in kwargs:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   449
            if self.uri_param_name and self.uri_param_name in kwargs:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   450
                kwargs['cwuri'] = kwargs[self.uri_param_name]
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   451
            else:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   452
                kwargs['cwuri'] = self._default_cwuri + str(self._count_cwuri)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   453
                self._count_cwuri += 1
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   454
        if 'eid' not in kwargs and self._eids_seq_range is not None:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   455
            # If eid is not given and the eids sequence is set,
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   456
            # use the value from the sequence
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   457
            kwargs['eid'] = self.get_next_eid()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   458
        # Check size constraints
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   459
        kwargs = self.apply_size_constraints(etype, kwargs)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   460
        # Apply default values
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   461
        kwargs = self.apply_default_values(etype, kwargs)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   462
        # Push data / Return entity
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   463
        self._data_entities[etype].append(kwargs)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   464
        entity = self._cnx.vreg['etypes'].etype_class(etype)(self._cnx)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   465
        entity.cw_attr_cache.update(kwargs)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   466
        if 'eid' in kwargs:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   467
            entity.eid = kwargs['eid']
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   468
        return entity
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   469
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   470
    ### RELATIONS CREATION ####################################################
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   471
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   472
    def relate(self, subj_eid, rtype, obj_eid, *args, **kwargs):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   473
        """ Compatibility with other stores
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   474
        """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   475
        # Init the table if necessary
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   476
        self.init_relation_table(rtype)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   477
        self._data_relations[rtype].append({'eid_from': subj_eid, 'eid_to': obj_eid})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   478
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   479
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   480
    ### FLUSH #################################################################
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   481
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   482
    def on_commit(self):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   483
        if self.on_commit_callback:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   484
            self.on_commit_callback()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   485
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   486
    def on_rollback(self, exc, etype, data):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   487
        if self.on_rollback_callback:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   488
            self.on_rollback_callback(exc, etype, data)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   489
            self._cnx.rollback()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   490
        else:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   491
            raise exc
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   492
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   493
    def commit(self):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   494
        self.on_commit()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   495
        super(MassiveObjectStore, self).commit()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   496
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   497
    def flush(self):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   498
        """ Flush the data
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   499
        """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   500
        self.flush_entities()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   501
        self.flush_internal_relations()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   502
        self.flush_relations()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   503
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   504
    def flush_internal_relations(self):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   505
        """ Flush the relations data
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   506
        """
10856
b839167d99a4 [dataimport] dict.iteritems() → dict.items()
Julien Cristau <julien.cristau@logilab.fr>
parents: 10855
diff changeset
   507
        for rtype, data in self._data_relations.items():
10853
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   508
            if not data:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   509
                # There is no data for these etype for this flush round.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   510
                continue
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   511
            buf = pgstore._create_copyfrom_buffer(data, ('eid_from', 'eid_to'),
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   512
                                                  replace_sep=self.replace_sep)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   513
            if not buf:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   514
                # The buffer is empty. This is probably due to error in _create_copyfrom_buffer
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   515
                raise ValueError
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   516
            cursor = self._cnx.cnxset.cu
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   517
            # Push into the tmp table
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   518
            cursor.copy_from(buf, '%s_relation_tmp' % rtype.lower(),
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   519
                             null='NULL', columns=('eid_from', 'eid_to'))
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   520
            # Clear data cache
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   521
            self._data_relations[rtype] = []
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   522
            # Commit if asked
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   523
            if self.commit_at_flush:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   524
                self.commit()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   525
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   526
    def flush_entities(self):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   527
        """ Flush the entities data
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   528
        """
10856
b839167d99a4 [dataimport] dict.iteritems() → dict.items()
Julien Cristau <julien.cristau@logilab.fr>
parents: 10855
diff changeset
   529
        for etype, data in self._data_entities.items():
10853
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   530
            if not data:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   531
                # There is no data for these etype for this flush round.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   532
                continue
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   533
            # XXX It may be interresting to directly infer the columns'
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   534
            # names from the schema instead of using .keys()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   535
            columns = data[0].keys()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   536
            # XXX For now, the _create_copyfrom_buffer does a "row[column]"
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   537
            # which can lead to a key error.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   538
            # Thus we should create dictionary with all the keys.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   539
            columns = set()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   540
            for d in data:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   541
                columns.update(d.keys())
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   542
            _data = []
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   543
            _base_data = dict.fromkeys(columns)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   544
            for d in data:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   545
                _d = _base_data.copy()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   546
                _d.update(d)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   547
                _data.append(_d)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   548
            buf = pgstore._create_copyfrom_buffer(_data, columns,
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   549
                                                  replace_sep=self.replace_sep)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   550
            if not buf:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   551
                # The buffer is empty. This is probably due to error in _create_copyfrom_buffer
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   552
                raise ValueError('Error in buffer creation for etype %s' % etype)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   553
            columns = ['cw_%s' % attr for attr in columns]
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   554
            cursor = self._cnx.cnxset.cu
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   555
            try:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   556
                cursor.copy_from(buf, 'cw_%s' % etype.lower(), null='NULL', columns=columns)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   557
            except Exception as exc:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   558
                self.on_rollback(exc, etype, data)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   559
            # Clear data cache
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   560
            self._data_entities[etype] = []
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   561
        if self.autoflush_metadata:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   562
            self.flush_meta_data()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   563
        # Commit if asked
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   564
        if self.commit_at_flush:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   565
            self.commit()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   566
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   567
    def flush_meta_data(self):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   568
        """ Flush the meta data (entities table, is_instance table, ...)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   569
        """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   570
        if self.slave_mode:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   571
            raise RuntimeError('Flushing meta data is not allow in slave mode')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   572
        if not self._dbh.table_exists('dataio_initialized'):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   573
            self.logger.info('No information available for initialized etypes/rtypes')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   574
            return
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   575
        if not self._metadata_table_created:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   576
            # Keep the correctly flush meta data in database
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   577
            sql = "CREATE TABLE dataio_metadata (etype text)"
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   578
            self.sql(sql)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   579
            self._metadata_table_created = True
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   580
        crs = self.sql('SELECT etype FROM dataio_metadata')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   581
        already_flushed = set(e for e, in crs.fetchall())
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   582
        crs = self.sql('SELECT retype FROM dataio_initialized WHERE type = %(t)s',
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   583
                       {'t': 'etype'})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   584
        all_etypes = set(e for e, in crs.fetchall())
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   585
        for etype in all_etypes:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   586
            if etype not in already_flushed:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   587
                # Deals with meta data
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   588
                self.logger.info('Flushing meta data for %s' % etype)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   589
                self.insert_massive_meta_data(etype)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   590
                sql = 'INSERT INTO dataio_metadata VALUES (%(e)s)'
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   591
                self.sql(sql, {'e': etype})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   592
        # Final commit
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   593
        self.commit()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   594
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   595
    def _cleanup_entities(self, etype):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   596
        """ Cleanup etype table """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   597
        if self._eids_seq_range is None:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   598
            # Remove DEFAULT eids sequence if added
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   599
            sql = 'ALTER TABLE cw_%s ALTER COLUMN cw_eid DROP DEFAULT;' % etype.lower()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   600
            self.sql(sql)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   601
        # Create indexes and constraints
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   602
        if self.drop_index:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   603
            tablename = SQL_PREFIX + etype.lower()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   604
            self.reapply_constraint_index(tablename)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   605
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   606
    def _cleanup_relations(self, rtype):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   607
        """ Cleanup rtype table """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   608
        # Push into relation table while removing duplicate
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   609
        sql = '''INSERT INTO %(r)s_relation (eid_from, eid_to) SELECT DISTINCT
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   610
                 T.eid_from, T.eid_to FROM %(r)s_relation_tmp AS T
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   611
                 WHERE NOT EXISTS (SELECT 1 FROM %(r)s_relation AS TT WHERE
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   612
                 TT.eid_from=T.eid_from AND TT.eid_to=T.eid_to);''' % {'r': rtype}
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   613
        self.sql(sql)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   614
        # Drop temporary relation table
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   615
        sql = ('DROP TABLE %(r)s_relation_tmp' % {'r': rtype.lower()})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   616
        self.sql(sql)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   617
        # Create indexes and constraints
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   618
        if self.drop_index:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   619
            tablename = '%s_relation' % rtype.lower()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   620
            self.reapply_constraint_index(tablename)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   621
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   622
    def cleanup(self):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   623
        """ Remove temporary tables and columns
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   624
        """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   625
        self.logger.info("Start cleaning")
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   626
        if self.slave_mode:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   627
            raise RuntimeError('Store cleanup is not allowed in slave mode')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   628
        self.logger.info("Start cleaning")
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   629
        # Cleanup relations tables
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   630
        for etype in self._initialized['init_uri_eid']:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   631
            self.sql('DROP TABLE uri_eid_%s' % etype.lower())
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   632
        # Remove relations tables
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   633
        for rtype in self._initialized['uri_rtypes']:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   634
            if not self._cnx.repo.schema.rschema(rtype).inlined:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   635
                self.sql('DROP TABLE %(r)s_relation_iid_tmp' % {'r': rtype})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   636
            else:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   637
                self.logger.warning("inlined relation %s: no cleanup to be done for it" % rtype)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   638
        self.commit()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   639
        # Get all the initialized etypes/rtypes
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   640
        if self._dbh.table_exists('dataio_initialized'):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   641
            crs = self.sql('SELECT retype, type FROM dataio_initialized')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   642
            for retype, _type in crs.fetchall():
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   643
                self.logger.info('Cleanup for %s' % retype)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   644
                if _type == 'etype':
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   645
                    # Cleanup entities tables - Recreate indexes
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   646
                    self._cleanup_entities(retype)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   647
                elif _type == 'rtype':
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   648
                    # Cleanup relations tables
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   649
                    self._cleanup_relations(retype)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   650
                self.sql('DELETE FROM dataio_initialized WHERE retype = %(e)s',
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   651
                         {'e': retype})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   652
        # Create meta constraints (entities, is_instance_of, ...)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   653
        self._create_metatables_constraints()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   654
        self.commit()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   655
        # Delete the meta data table
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   656
        for table_name in ('dataio_initialized', 'dataio_constraints', 'dataio_metadata'):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   657
            if self._dbh.table_exists(table_name):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   658
                self.sql('DROP TABLE %s' % table_name)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   659
        self.commit()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   660
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   661
    def insert_massive_meta_data(self, etype):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   662
        """ Massive insertion of meta data for a given etype, based on SQL statements.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   663
        """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   664
        # Push data - Use coalesce to avoid NULL (and get 0), if there is no
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   665
        # entities of this type in the entities table.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   666
        # Meta data relations
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   667
        self.metagen_push_relation(etype, self._cnx.user.eid, 'created_by_relation')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   668
        self.metagen_push_relation(etype, self._cnx.user.eid, 'owned_by_relation')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   669
        self.metagen_push_relation(etype, self.source.eid, 'cw_source_relation')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   670
        self.metagen_push_relation(etype, self._etype_eid_idx[etype], 'is_relation')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   671
        self.metagen_push_relation(etype, self._etype_eid_idx[etype], 'is_instance_of_relation')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   672
        sql = ("INSERT INTO entities (eid, type, asource, extid) "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   673
               "SELECT cw_eid, '%s', 'system', NULL FROM cw_%s "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   674
               "WHERE NOT EXISTS (SELECT 1 FROM entities WHERE eid=cw_eid)"
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   675
               % (etype, etype.lower()))
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   676
        self.sql(sql)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   677
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   678
    def metagen_push_relation(self, etype, eid_to, rtype):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   679
        sql = ("INSERT INTO %s (eid_from, eid_to) SELECT cw_eid, %s FROM cw_%s "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   680
               "WHERE NOT EXISTS (SELECT 1 FROM entities WHERE eid=cw_eid)"
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   681
               % (rtype, eid_to, etype.lower()))
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   682
        self.sql(sql)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   683
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   684
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   685
### CONSTRAINTS MANAGEMENT FUNCTIONS  ##########################################
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   686
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   687
def get_size_constraints(schema):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   688
    """analyzes yams ``schema`` and returns the list of size constraints.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   689
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   690
    The returned value is a dictionary mapping entity types to a
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   691
    sub-dictionnaries mapping attribute names -> max size.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   692
    """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   693
    size_constraints = {}
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   694
    # iterates on all entity types
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   695
    for eschema in schema.entities():
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   696
        # for each entity type, iterates on attribute definitions
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   697
        size_constraints[eschema.type] = eschema_constraints = {}
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   698
        for rschema, aschema in eschema.attribute_definitions():
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   699
            # for each attribute, if a size constraint is found,
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   700
            # append it to the size constraint list
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   701
            maxsize = None
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   702
            rdef = rschema.rdef(eschema, aschema)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   703
            for constraint in rdef.constraints:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   704
                if isinstance(constraint, SizeConstraint):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   705
                    maxsize = constraint.max
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   706
                    eschema_constraints[rschema.type] = maxsize
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   707
    return size_constraints
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   708
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   709
def get_default_values(schema):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   710
    """analyzes yams ``schema`` and returns the list of default values.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   711
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   712
    The returned value is a dictionary mapping entity types to a
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   713
    sub-dictionnaries mapping attribute names -> default values.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   714
    """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   715
    default_values = {}
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   716
    # iterates on all entity types
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   717
    for eschema in schema.entities():
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   718
        # for each entity type, iterates on attribute definitions
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   719
        default_values[eschema.type] = eschema_constraints = {}
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   720
        for rschema, _ in eschema.attribute_definitions():
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   721
            # for each attribute, if a size constraint is found,
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   722
            # append it to the size constraint list
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   723
            if eschema.default(rschema.type) is not None:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   724
                eschema_constraints[rschema.type] = eschema.default(rschema.type)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   725
    return default_values
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   726
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   727
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   728
class PGHelper(object):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   729
    def __init__(self, cnx, pg_schema='public'):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   730
        self.cnx = cnx
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   731
        # Deals with pg schema, see #3216686
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   732
        self.pg_schema = pg_schema
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   733
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   734
    def application_indexes_constraints(self, tablename):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   735
        """ Get all the indexes/constraints for a given tablename """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   736
        indexes = self.application_indexes(tablename)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   737
        constraints = self.application_constraints(tablename)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   738
        _indexes = {}
10856
b839167d99a4 [dataimport] dict.iteritems() → dict.items()
Julien Cristau <julien.cristau@logilab.fr>
parents: 10855
diff changeset
   739
        for name, query in indexes.items():
10853
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   740
            # Remove pkey indexes (automatically created by constraints)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   741
            # Specific cases of primary key, see #3224079
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   742
            if name not in constraints:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   743
                _indexes[name] = query
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   744
        return _indexes, constraints
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   745
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   746
    def table_exists(self, table_name):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   747
        sql = "SELECT * from information_schema.tables WHERE table_name=%(t)s AND table_schema=%(s)s"
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   748
        crs = self.cnx.system_sql(sql, {'t': table_name, 's': self.pg_schema})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   749
        res = crs.fetchall()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   750
        if res:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   751
            return True
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   752
        return False
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   753
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   754
    # def check_if_primary_key_exists_for_table(self, table_name):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   755
    #     sql = ("SELECT constraint_name FROM information_schema.table_constraints "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   756
    #            "WHERE constraint_type = 'PRIMARY KEY' AND table_name=%(t)s AND table_schema=%(s)s")
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   757
    #     crs = self.cnx.system_sql(sql, {'t': table_name, 's': self.pg_schema})
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   758
    #     res = crs.fetchall()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   759
    #     if res:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   760
    #         return True
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   761
    #     return False
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   762
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   763
    def index_query(self, name):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   764
        """Get the request to be used to recreate the index"""
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   765
        return self.cnx.system_sql("SELECT pg_get_indexdef(c.oid) "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   766
                                   "from pg_catalog.pg_class c "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   767
                                   "LEFT JOIN pg_catalog.pg_namespace n "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   768
                                   "ON n.oid = c.relnamespace "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   769
                                   "WHERE c.relname = %(r)s AND n.nspname=%(n)s",
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   770
                                   {'r': name, 'n': self.pg_schema}).fetchone()[0]
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   771
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   772
    def constraint_query(self, name):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   773
        """Get the request to be used to recreate the constraint"""
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   774
        return self.cnx.system_sql("SELECT pg_get_constraintdef(c.oid) "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   775
                                   "from pg_catalog.pg_constraint c "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   776
                                   "LEFT JOIN pg_catalog.pg_namespace n "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   777
                                   "ON n.oid = c.connamespace "
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   778
                                   "WHERE c.conname = %(r)s AND n.nspname=%(n)s",
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   779
                                   {'r': name, 'n': self.pg_schema}).fetchone()[0]
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   780
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   781
    def application_indexes(self, tablename):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   782
        """ Iterate over all the indexes """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   783
        # This SQL query (cf http://www.postgresql.org/message-id/432F450F.4080700@squiz.net)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   784
        # aims at getting all the indexes for each table.
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   785
        sql = '''SELECT c.relname as "Name"
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   786
        FROM pg_catalog.pg_class c
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   787
        JOIN pg_catalog.pg_index i ON i.indexrelid = c.oid
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   788
        JOIN pg_catalog.pg_class c2 ON i.indrelid = c2.oid
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   789
        LEFT JOIN pg_catalog.pg_user u ON u.usesysid = c.relowner
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   790
        LEFT JOIN pg_catalog.pg_namespace n ON n.oid = c.relnamespace
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   791
        WHERE c.relkind IN ('i','')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   792
        AND c2.relname = '%s'
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   793
        AND n.nspname NOT IN ('pg_catalog', 'pg_toast')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   794
        AND pg_catalog.pg_table_is_visible(c.oid);''' % tablename
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   795
        indexes_list = self.cnx.system_sql(sql).fetchall()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   796
        indexes = {}
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   797
        for name, in indexes_list:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   798
            indexes[name] = self.index_query(name)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   799
        return indexes
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   800
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   801
    def application_constraints(self, tablename):
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   802
        """ Iterate over all the constraints """
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   803
        sql = '''SELECT i.conname as "Name"
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   804
                 FROM pg_catalog.pg_class c JOIN pg_catalog.pg_constraint i
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   805
                 ON i.conrelid = c.oid JOIN pg_catalog.pg_class c2 ON i.conrelid=c2.oid
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   806
                 LEFT JOIN pg_catalog.pg_user u ON u.usesysid = c.relowner
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   807
                 LEFT JOIN pg_catalog.pg_namespace n ON n.oid = c.relnamespace
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   808
                 WHERE c2.relname = '%s' AND n.nspname NOT IN ('pg_catalog', 'pg_toast')
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   809
                 AND pg_catalog.pg_table_is_visible(c.oid);''' % tablename
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   810
        indexes_list = self.cnx.system_sql(sql).fetchall()
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   811
        constraints = {}
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   812
        for name, in indexes_list:
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   813
            query = self.constraint_query(name)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   814
            constraints[name] = 'ALTER TABLE %s ADD CONSTRAINT %s %s' % (tablename, name, query)
de741492538d [dataimport] backport massive store from dataio cube
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents:
diff changeset
   815
        return constraints