tests: add tests for conflicts while respecting commands.update.check
This patch adds tests to check that we don't run into conflicts while respecting
commands.update.check.
The error message now does not show the hint about --merge option which we
should fix.
syntax: re
/figures/[^/]+\.png$
^html/
\.pyc$
~$
\.swp$
\.orig$
\.rej$
^tests/.*\.err$
^tests/easy_run.sh$
^build/
^dist/
^MANIFEST$
^docs/tutorials/.*\.rst$
\.ico$
tests/\.testtimes
^docs/training/graphs/
^docs/training/html/
^docs/training/index.html
^docs/training/graphviz-images/
^docs/training/img/
^docs/training/output/
^docs/training/pandocfilters/