[debug-toolbar/display_source_code] add function to generate html link to source code

[debug-toolbar/display_source_code/security] add security mechanism to only read whitelisted files Closes #17256791

[debug-toolbar/display_source_code] add helper to render link to source file Closes #17256791

[debug-toolbar/display_source_code] add a pyramid view that display syntax highlighted python source file This will be used for tool building for easier debugging. Closes #17256791

[mod] allow to pass generic additional arguments to pygments HtmlFormatter

[debug/fix] ensure that not syntax highlighted code is a string Otherwise it could be in another unrendered form that makes marko complains. Closes #17256791

[debug-toolbar] add registry decisions debug panel Closes #17219866

Increase needed version of logilab-common to >= 1.5.0

[debug-toolbar] add registry panel Closes #17219866

[debug-toolbar] add sql panel Closes #17219873

[debug-toolbar] add cw general panel with controller Closes #17219897

[debug-toolbar] make linter happy

[pyramid/ctl/debugtoolbar] automatically include custom panels on -t

[debug-toolbar/rql] display sql queries generated by rql ones

[debug-toolbar/rql] add RQL panel Closes #17219673

[debug/emit/rql] add RQL debug channel and emit queries This is used for the RQL debug panel but can be used as a generic mechanism for several tools.

[debug/source_highlight] rename highlight to highlight_terminal

[debug/source_highlight] add highlight_html and generate_css for debugtool panels

[debug/rql] bind a uniq token per rql to trace its decomposition This is aimed to be used by the RQL debug panel (and the SQL one later on) but can also be used by other debugging tools.

[debug] add a new channel events mechanism for debugging

[ctl] allow to specific instance name for instance commands in $CW_INSTANCE Closes #17253994

[cubicweb/utils] add QueryCache.__contains__() to improve dict-like behavior. Closes #255426

[migrations/pdb] add to every failing migration operation a "p(db)" option Instead, the migration command will just crash without offering the possibility of the user to debug or continue the migration. Closes #17219772

[pyramid/ctl] add a new option to activate the debugtoolbar (-t) While this toolbar isn't yet very integrated with CW, it integrates an inline debugging shell like werkzeug for flask or django_extensions which greatly helps debugging on exception. It can already be manually activated by writting "pyramid.includes = pyramid_debugtoolbar" but it's hidden somewhere in the documentation and not very accessible and annoying to do. Closes #17219765

[changelog] add missing information to the 3.27 changelog

Merge 3.26

[debug] add ALL possibility to --dbglevel

[ux] display instance name in suggested upgrade command

[migration/pdb] display traceback instead of only the exception for easier debugging Closes #17219820

[migration/pdb] add option to use pdb.post_mortem if traceback is provided Post mortem is a mode where the pdb shell is opened **where** the exception as occured instead at the breakpoint for set_trace. This is way more useful for debugging for the user because is will have the full context of the error. Closes #17219827

[migration/shell] select ipdb if present on (d)ebug mode Closes #17219833

[mod] move get_pdb to utils.py

Add a migration function in order to relocate bfss Related to https://www.cubicweb.org/ticket/1903304

[pyramid/debug] on every request display request path and selected controller This will display lines like: 2019-06-12 16:26:57 - (cubicweb.pyramid.bwcompat) INFO: REQUEST [view] '/wiki/334037' selected controller <cubicweb.web.views.basecontrollers.ViewController object at 0x7f133802ae90> at /root/.virtualenvs/abreton/local/lib/python2.7/site-packages/cubicweb/web/views/basecontrollers.py:120 2019-06-12 16:26:59 - (cubicweb.pyramid.bwcompat) INFO: REQUEST [data] '/data/ea5eb3b6f89fba0ff4b671093c88d3dd/images/cartouche-mur.jpg' selected controller <cubicweb.web.views.staticcontrollers.DataController object at 0x7f1332a84d50> at /root/.virtualenvs/abreton/local/lib/python2.7/site-packages/cubicweb/web/views/staticcontrollers.py:179 The make debugging easier as this isn't done already. Most other web frameworks do something similar for the developper to be able to understand what is happening right now. Closes #17219741

[logging/debug] move transaction operations logs from self.debug to DBG_OPS There were a mixing between displaying transaction operations log on logger.debug and only when DBG_OPS was on, uniformize everything behind DBG_OPS. Closes #17229126

[debug] syntax highlight SQL and RQL debug output This prevent DBG_RQL and DBG_SQL output to looks like a gigantic blob of white text. Do this only if we detect that we are in a tty and that pygments is installed. Closes #17222885

[logging] send logs by default to stdout Following the move to have commands only working on foreground sending logs to a file by default doesn't make much more sens anymore so send them to stdout by default and add a new option to send them to a file if needed

[cubicweb-ctl] backport --dbglevel option of pyramid to all instance commands Closes #17219653

[cubicweb-ctl] backport --loglevel option of pyramid to all instance commands

[cubicweb-ctl/fix] correctly get exception traceback_ for pdb.post_mortem In python 3 the behavior of sys.exc_info had a very subtle change: - in python 2 you can call if whenever you want after a try/except statement and you'll get information about this last raise - ipython 3, once you get out of try/except, sys.exc_info is cleaned and you'll get (None, None, None) Hardened the test to avoid this error from happening again.

Document mercurial configuration for contributing * how to use master/review repositories * how to send the "Available at" command in patchbomb emails * how to add the "cubicweb" flag in patchbomb emails * how to use our "jenkins" mercurial extension Closes #17243538

Add documentation on workflow permission

Remove undefined function in documentation

Merge 3.26

[pyramid/ctl] pyramid command will always run in foreground from now on Daemonization used to make sens in the past, but today "pyramid" command is only used for dev and should never be used for deployement (you should use a wsgi server for that instead) so daemonization doesn't fit any use case anymore. Closes #17232923

[clean] remove pyramid warning about looping task This warning isn't useful anymore.

[doc] add instruction to re-enable ckeditor

[fix] reference to underclared and unused variable kwargs

Avoid to update inlined relation column to NULL when deleting entities When deleting entities, cubicweb run a rql DELETE on all relations to trigger hooks. For an inlined relation this also mean set the column to NULL. This operation may fail if there's additional constraints on the column. Also this is a weird and useless behavior since deleting the entity row will by definition delete the relation. We still doesn't handle the case where both subject and object are going to be deleted because rows need to be deleted in a particular order that cubicweb doesn't handle. Add a test checking UPDATE does not occur but hooks are correctly called. Closes #17236690

Drop useless ConstraintInsertionTC This test does nothing and is here from the begining of repo history. Now it raise an error "TypeError: Skipped expected string as 'msg' parameter, got 'SkipTest' instead. Perhaps you meant to use a mark?" Just drop it.

Backed out changeset 741dc2590f90 It was for cube s3storage, but this piece of information was apparently not in the email (used for review), so this patch was published in the wrong repository. :-/

[.gitlab-ci] initial version (tox targets)

Merge with 3.26

Added tag debian/3.26.14-1, 3.26.14 for changeset 172f683a84f6

[pkg] version 3.26.14

[py3] Pass bytes as "msg" to smtplib.SMTP.sendmail() When passing a unicode string to smtplib.SMTP.sendmail() as "msg" argument, there is an implicit bytes encoding using "ascii" encoding in python3. Of course this does not work if the string contains non-ASCII characters. In fact, config's sendmails method intent to pass bytes to smtplib.SMTP.sendmail() as it uses msg.as_string() method. Unfortunately, in python3, this method returns a unicode string whereas it returns a bytes string in python2; we thus fix this by calling as_bytes() method on python3. As there is no "as_bytes" method in python2, we need to handle python2 compatibility by hand and either call as_string() or as_bytes(). In testlib, where we mock smtplib.SMTP, we need to keep the "msg" argument of Email class (defined in testlib as well) a unicode string. Otherwise, it fails to be parsed by email.message_from_string() (from stdlib) if it is bytes on python3.

[debian] Cleanup d/source/options from now gone symlinks

[pkg] Version 3.27.0.a2

[debug/clean] remove unused DBG_MS flag

Avoid using gone hooks_control() in migration This deprecated function got dropped in a8c1ea390400. Remove unused import in 3.10.9_Any.py migration; replace usage in bootstrapmigration_repository.py by non-deprecated form.

[tox] Remove --ignore in check-manifest check All symlinks have been dropped in previous changesets.

[doc] link to 3.27 (and missing 3.26) pages

[pkg] Version 3.27.0a1

[test] Replace symlinks by real copies This solves a "python setup.py build" issue.

[pkg] Version 3.27.0a0

Merge with 3.26

Added tag debian/3.26.13-1, 3.26.13 for changeset 1fc684253207

[pkg] Version 3.26.13

[test] Replace symlinks in legacy_cubes by real copies This solves a "python setup.py build" issue on my machine. Copying these files should not be a big deal because they have been dropped in the "default" branch and we would not touch them in 3.26 branch.

[pkg] Prune packaging files from sdist

[pkg] Fix spelling mistake in doc-base abstract

[pkg] Fix doc-base section As pointed by Lintian, the “Apps” section is only used in menu, not in doc-base. We can just remove it.

[pkg] Move lintian-overrides file to debian/source directory Just use the now preferred location.

[pkg] Tidy substvars usage in control file The documentation package was missing a Built-Using field to record the provenance of the templates. Empty packages or meta packages do not require Depends on a specific Python version, so we can remove the relevant substvars.

[pkg] Specify priority “optional” instead of the obsolete “extra” Quoting Lintian, “Since Debian Policy version 4.0.1, the priority extra has been deprecated.” So let's use “optional” instead.

[pkg] Switch to Debian source format 3.0 (quilt) This forces us to base the Debian package on the source of the Python package (as produced by running `python3 setup.py sdist`). While it might seem cumbersome, this greatly reduces likelyhood of mismatch between an installation via `pip` and one using the Debian package. `dpkg-source` will also document for us what is currently in the source repository but not in the Python package. Currently the missing file are: PKG-INFO cubicweb/sobjects/test/data/cubicweb_comment/schema.py cubicweb/sobjects/test/data/cubicweb_comment/__init__.py cubicweb/sobjects/test/data/cubicweb_comment/__pkginfo__.py cubicweb/sobjects/test/data/cubicweb_card/schema.py cubicweb/sobjects/test/data/cubicweb_card/entities.py cubicweb/sobjects/test/data/cubicweb_card/__init__.py cubicweb/sobjects/test/data/cubicweb_card/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_comment/schema.py cubicweb/server/test/data-migractions/cubicweb_comment/__init__.py cubicweb/server/test/data-migractions/cubicweb_comment/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_localperms/schema.py cubicweb/server/test/data-migractions/cubicweb_localperms/__init__.py cubicweb/server/test/data-migractions/cubicweb_localperms/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_basket/schema.py cubicweb/server/test/data-migractions/cubicweb_basket/__init__.py cubicweb/server/test/data-migractions/cubicweb_basket/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_comment/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_comment/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_comment/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_localperms/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_localperms/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_localperms/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_basket/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_basket/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_basket/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_tag/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_tag/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_tag/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_card/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_card/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_card/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_file/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_file/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_file/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_tag/schema.py cubicweb/server/test/data-migractions/cubicweb_tag/__init__.py cubicweb/server/test/data-migractions/cubicweb_tag/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_card/schema.py cubicweb/server/test/data-migractions/cubicweb_card/__init__.py cubicweb/server/test/data-migractions/cubicweb_card/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_file/schema.py cubicweb/server/test/data-migractions/cubicweb_file/__init__.py cubicweb/server/test/data-migractions/cubicweb_file/__pkginfo__.py cubicweb/test/data-rewrite/cubicweb_localperms/schema.py cubicweb/test/data-rewrite/cubicweb_localperms/__init__.py cubicweb/test/data-rewrite/cubicweb_localperms/__pkginfo__.py cubicweb/test/data-rewrite/cubicweb_card/schema.py cubicweb/test/data-rewrite/cubicweb_card/entities.py cubicweb/test/data-rewrite/cubicweb_card/__init__.py cubicweb/test/data-rewrite/cubicweb_card/__pkginfo__.py The current manifest will duplicate several files that are stored as symlinks in the Mercurial repository, hence the long list of ignored files in `extend-diff-ignore`.

[debian] Update description of cubicweb-ctl* packages init scripts are no longer shipped. Avoid mentionning "start" and "stop" command which should not be used in production environments.

[debian] Introduce a cubicweb-ctl3 binary package This packages conflicts with cubicweb-ctl binary which uses the python2 library. It is meant to ease upgrade of existing installation during the migration from python2 to python3: in particular, by installing cubicweb-ctl3, scripts calling "cubicweb-ctl" command should still work as before.

[cubicweb-ctl] respect sys.exit status code when aborting a command When exploring the stack of all calls to a cubicweb-ctl command, it has been discovered than on a KeyboardInterrupt and on a SystemExit exception the base class InstanceCommand (for commands that works on one instance) will always set the return code of cubicweb-ctl to 8: this mean that if another command do a `sys.exit(some_code)` the exit code will be ignored and overwritten by '8'. This behavior is not intuitive, apparently not documented and doesn't seems to have any justification. It also prevent commands from exciting with different return codes which could be a desired behavior in the situation of scripting.

[test] Add an "actionverb" attribute to test commands

[test] use self.assertRaises() in cwctl tests

[test] ensure mocking is stopped in cwctl tests Either use a decorator or ensure that cleanup is performed. This is so as to prevent global state modification.

[cubicweb-ctl] add '--pdb' global option to launch (i)pdb on exception

[test] Rename TestCommand to avoid PytestCollectionWarning

[pkg] Add new autopkgtest for skeleton packaging When running `cubicweb-ctl newcube`, the generated template provides debian packaging. So let's add automated tests for that using autopkgtest. The new test will generated a new cube, build a source tarball, build the package, try to install it, see if the Python 2 and 3 modules are available and even run autopkgtest against the newly created packages. Along the way it will also print information about the generated package: buildinfo, package content, and lintian report.

[skeleton] Update Debian packaging template Here are multiple updates to the Debian packaging template provided when running `cubicweb-ctl newcube`: * Switch to source format 3.0 (quilt). * Switch to debhelper 9. * Switch to dh-python. * Add Python 3 packages. * Name the binary packages `python-cubicweb-CUBENAME` and `python3-cubicweb-CUBENAME` instead of just `cubicweb-CUBENAME` (which is still the source package). * Populate Depends using dh_python{2,3} support for Python requirements. * Run test suite at build time using pytest. * Add autopkgtest to run test suite against the installed package. * Bump Standards-Version to 4.3.0.

[test] Use --short-description when testing newcube command

[devtools] Allow to specify short desc on `newcube` command line In order to implement automated testing of `cubicweb-ctl newcube`, we need to avoid any user interaction. So we add a `-s` switch to specify a short description on the command-line instead of requiring an input.

[pkg] Add new autopkgtest for skeleton packaging When running `cubicweb-ctl newcube`, the generated template provides debian packaging. So let's add automated tests for that using autopkgtest. The new test will generated a new cube, build a source tarball, build the package, try to install it, see if the Python 3 module is available and even run autopkgtest against the newly created packages. Along the way it will also print information about the generated package: buildinfo, package content, and lintian report.

[cubicweb-ctl] move to accepting only once instance name per command The rationals behind this decision are: - while in the past managing all instances sytem wide made a lot of sens, pratices have evolved today and we've moved to managing one instance by one - this makes things easier to debug since commands since using them on several instances were making this harder (errors hidden in the middle) - also solve the problem of the return code to have, before it was always 0 which prevented to do things like: ipython --pdb $(which cubicweb-ctl) $command $instance or shell scripts that used it - this simplify the code and is always good to take

[pkg] Run all unit tests in autopkgtest We previously forgot to copy `tox.ini` alongside the tests. As this file configures pytest pattern matching rules, we were not running quite a few tests. This is now fixed. The added tests required some adjustments in the Debian dependencies. Sadly, not all tests currently pass. It seems there are some ordering dependencies between the tests in regards to how data are loaded. Fixing this probably would probably be better debugged by ensuring the test suite does not fail when using pytest random-order plugin.

[pkg] Stop running unit tests from skeleton The test files shipped as part as the skeleton for `cubeweb-ctl newcube` are not meant to be run as part of our test suite!

[tests] Use 16 bytes key when testing Blowfish The version of Cryptodome currently in Debian only accepts Blowfish keys with at least 5 bytes. This is a bug (it should accept 4 as it did before) that has since been fixed upstream: https://github.com/Legrandin/pycryptodome/commit/93912230f3c39e09f4038cb17e301468687c6538 So we work around this issue by using a 16 bytes key instead (which happens to be the minimum recommended length).

Use time.process_time() instead of deprecated clock() This fixes: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead

[web] Make the time separator configurable in JQueryDateTimePicker We add a "separator" argument to JQueryDateTimePicker which will be used when creating the underlying JQueryTimePicker instance so that the user can control how time is displayed by the widget. This is very similar to the "timesteps" argument that's already present.

Added tag 3.26.12, debian/3.26.12-1 for changeset 4531a266f8b2

[pkg] Version 3.26.12

[autoform] Fix display_fields handling This follows-up on changeset b2ceb483e056 (present in 3.25 as well), in which AutomaticEntityForm.editable_attributes() was turned into a generator. In this method, in case display_fields is not None, we previously returned a list of (rtype, role); this was changed into a yield, but the change was missing a return after the loop in order not to go through the remainder of the function. Add tests for editable_attributes() method.

Flake8 cubicweb/web/views/autoform.py Fixes: cubicweb/web/views/autoform.py:703: [E122] continuation line missing indentation or outdented cubicweb/web/views/autoform.py:704: [E122] continuation line missing indentation or outdented cubicweb/web/views/autoform.py:819: [W504] line break after binary operator cubicweb/web/views/autoform.py:820: [E125] continuation line with same indent as next logical line cubicweb/web/views/autoform.py:961: [W504] line break after binary operator cubicweb/web/views/autoform.py:962: [E126] continuation line over-indented for hanging indent

[py3] unicode() -> six.text_type in autoform

Added tag debian/3.26.11-2 for changeset e7eb914df71d

[debian] Release 3.26.11-2

[test] Require pycryptodomex, not pycryptodome This follows up on changeset 5b0ce10a7046.

[debian] Mention Lintian warnings fixes from previous changesets

[debian] Remove unused/redundant entries from debian/cubicweb-ctl.dirs * bash completion entry produces a lintian warning "package-installs-into-obsolete-dir etc/bash_completion.d/", and it does not install bash completion. * doc directory should be handled automatically.

[debian] Make descriptions of python-cubicweb and python3-cubicweb uniform Thus solving lintian warning "description-synopsis-starts-with-article".

[debian] Mention that -postgresql-support binaries are dependency package Fixing lintian warning "empty-binary-package".

[debian] Add ${misc:Depends} where missing Fixes lintian warning "debhelper-but-no-misc-depends".

[debian] Set Section: python for python- binary package This is to fix a Lintian warning.

[debian] Install cubicweb-ctl from python2 build Previously, the binary package was empty. Now it is bound to the python2 package as support for python3 is "fresh". In order python2 and python3 packages to be co-installable, we drop the cubicweb-ctl file from both packages.

[debian] Introduce python3-cubicweb and python3-cubicweb-pyramid binary packages This is the bare minimum to have a working cubicweb on python3. Further work is done in default branch.

[skeleton] Update Debian packaging template Here are multiple updates to the Debian packaging template provided when running `cubicweb-ctl newcube`: * Switch to source format 3.0 (quilt). * Switch to debhelper 9. * Switch to dh-python. * Switch to Python 3. * Name the binary package `python3-cubicweb-CUBENAME` instead of just `cubicweb-CUBENAME` (which is still the source package). * Populate Depends using dh_python3 support for Python requirements. * Run test suite at build time using pytest. * Add autopkgtest to run test suite against the installed package. * Bump Standards-Version to 4.3.0.

[test] Use --short-description when testing newcube command

[devtools] Allow to specify short desc on `newcube` command line In order to implement automated testing of `cubicweb-ctl newcube`, we need to avoid any user interaction. So we add a `-s` switch to specify a short description on the command-line instead of requiring an input.

[pkg] Remove build dependency on dh-systemd As suggested by Lintian, remove build dependency on obsolete package dh-systemd. Instead, specify a more precise version of debhelper 9 that added support for systemd.

[config] Raise in case of failure to send emails when in test mode Since, for some reason, exception log messages are not visible when running tests, it's very hard to debug when sendmails() method fails during tests. So, as in some other places, let's raise the exception when in test mode.

[doc] Update documentation to match current Debian packages

[pkg] Remove transitional packages We can take the opportunity of the switch to Python 3 to get rid of old transitional packages. Let's do it. :)

[pkg] Use sections from requires.txt to populate Recommends and Suggests As Denis Laxalde pointed out, dh_python can also generate Recommends and Suggests from Python package names. So let's use that instead of manually populating these fields in `debian/control`. Optional dependencies are currently specified in `setup.py` grouped by feature. These dependency groups are turned into sections in `requires.txt`. Thankfully `dh_python3` has options to populate Recommends or Suggests with all package from a given section. `debian/rules` now contains a list of which sections should go to Recommends and which section should go to Suggests. Because such extra list easily gets out-of-sync, we add a third list for ignored sections, and ensure that all sections currently in `requires.txt` get a mentioned in `debian/rules`. Here are the results compared to the previous version with explicit Recommends and Suggests (only listing Python packages): |==============================================================| | only in previous | common | only in new | |==============================================================| | Recommends | |--------------------------------------------------------------| | | python3-docutils | | | python3-fyzz | | | | python3-imaging | | | | | python3-pycryptodome | | | | python3-pyramid | | | | python3-pyramid-multiauth | | | python3-pysqlite2 | | | | | python3-rdflib | | | | python3-repoze.lru | | | python3-simpletal | | | | | python3-vobject | | | | python3-waitress | | | python3-werkzeug | | | | | python3-wsgicors | | |--------------------------------------------------------------| | Suggests | |--------------------------------------------------------------| | | | python3-pil | We also lose versioned dependencies which should not really be an issue for Recommends and Suggests.

[crypto] Use Cryptodome namespace instead of Crypto PyCryptodome comes in two flavors: “an almost drop-in replacement for the old PyCrypto library” and “a library independent of the old PyCrypto”. The former uses the Crypto namespace, and is shipped as `pycryptodome` while the latter uses Cryptodome instead and lies in the `pycryptodomex` package. Given the reason to switch to PyCryptodome is that PyCrypto in unmaintained, its probably better to avoid any mistake and mandate the specific usage of the Cryptodome namespace by requiring `pycryptodomex` instead of `pycryptodome`. A more present reason is that Debian buster will only provide a package with the separate namespace flavor. The current Recommends is not working with the current code. Although it's important to note that the package name will probably have to be changed to `python3-pycryptodomex` once https://bugs.debian.org/886291 is solved.

[pkg] Remove python3-six from Build-Depends The default branch only provides support for Python 3.

[pkg] Merge python3-cubicweb-pyramid into python3-cubicweb As suggested by Denis Laxalde, we can merge python3-cubicweb-pyramid into python3-cubicweb as all other web backend in the default branch.

[pkg] Remove explicit Depends on Python packages for python3-cubicweb As suggested by Denis Laxalde, we can let pybuild generate the list of Depends from the egg requirements. The list we get is slightly less specific in terms of needed versions, but given the age of the previous ones, it's unlikely to cause issues. Also we lose python3-six from the list… which is correct as it was removed from the dependencies in 26744ad37953.

[pkg] Fix spelling mistake in doc-base abstract

[pkg] Fix doc-base section As pointed by Lintian, the “Apps” section is only used in menu, not in doc-base. We can just remove it.

[pkg] Use “dependency package” instead of “virtual package” to describe python3-cubicweb-postgresql-support The term “virtual” was too imprecise and is not accepted for empty packages by Lintian anymore.

[pkg] Move lintian-overrides file to debian/source directory Just use the now preferred location.

[pkg] Stop using /etc/bash_completion.d cubicweb-ctl shipped an empty /etc/bash_completion.d as a leftover of shipping a bash completion script. As pointed by Lintian, this directory is not obsolete, so let's get rid of it for good.

[pkg] Tidy substvars usage in control file The documentation package was missing a Built-Using field to record the provenance of the templates. Empty packages or meta packages do not require Depends on a specific Python version, so we can remove the relevant substvars.

[pkg] Specify priority “optional” instead of the obsolete “extra” Quoting Lintian, “Since Debian Policy version 4.0.1, the priority extra has been deprecated.” So let's use “optional” instead.

[pkg] Remove build dependency on dh-systemd As suggested by Lintian, remove build dependency on obsolete package dh-systemd. Instead, specify a more precise version of debhelper 9 that added support for systemd.

[pkg] Run test suite as part of autopkgtest Add support for autopkgtest. The test “unittest” will run the test suite using pytest. As we need PostgreSQL in the test environment and open network connection, the test is marked with `isolation-container` and requires at least LXC to be run, e.g: autopkgtest -s -- lxc -s autopkgtest-sid

[pkg] Switch to Debian source format 3.0 (quilt) This forces us to base the Debian package on the source of the Python package (as produced by running `python3 setup.py sdist`). While it might seem cumbersome, this greatly reduces likelyhood of mismatch between an installation via `pip` and one using the Debian package. `dpkg-source` will also document for us what is currently in the source repository but not in the Python package. Currently the missing file are: PKG-INFO cubicweb/sobjects/test/data/cubicweb_comment/schema.py cubicweb/sobjects/test/data/cubicweb_comment/__init__.py cubicweb/sobjects/test/data/cubicweb_comment/__pkginfo__.py cubicweb/sobjects/test/data/cubicweb_card/schema.py cubicweb/sobjects/test/data/cubicweb_card/entities.py cubicweb/sobjects/test/data/cubicweb_card/__init__.py cubicweb/sobjects/test/data/cubicweb_card/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_comment/schema.py cubicweb/server/test/data-migractions/cubicweb_comment/__init__.py cubicweb/server/test/data-migractions/cubicweb_comment/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_localperms/schema.py cubicweb/server/test/data-migractions/cubicweb_localperms/__init__.py cubicweb/server/test/data-migractions/cubicweb_localperms/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_basket/schema.py cubicweb/server/test/data-migractions/cubicweb_basket/__init__.py cubicweb/server/test/data-migractions/cubicweb_basket/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_comment/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_comment/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_comment/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_localperms/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_localperms/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_localperms/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_basket/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_basket/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_basket/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_tag/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_tag/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_tag/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_card/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_card/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_card/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_file/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_file/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_file/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_tag/schema.py cubicweb/server/test/data-migractions/cubicweb_tag/__init__.py cubicweb/server/test/data-migractions/cubicweb_tag/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_card/schema.py cubicweb/server/test/data-migractions/cubicweb_card/__init__.py cubicweb/server/test/data-migractions/cubicweb_card/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_file/schema.py cubicweb/server/test/data-migractions/cubicweb_file/__init__.py cubicweb/server/test/data-migractions/cubicweb_file/__pkginfo__.py cubicweb/test/data-rewrite/cubicweb_localperms/schema.py cubicweb/test/data-rewrite/cubicweb_localperms/__init__.py cubicweb/test/data-rewrite/cubicweb_localperms/__pkginfo__.py cubicweb/test/data-rewrite/cubicweb_card/schema.py cubicweb/test/data-rewrite/cubicweb_card/entities.py cubicweb/test/data-rewrite/cubicweb_card/__init__.py cubicweb/test/data-rewrite/cubicweb_card/__pkginfo__.py The current manifest will duplicate several files that are stored as symlinks in the Mercurial repository, hence the long list of ignored files in `extend-diff-ignore`.

[pkg] Switch all Debian packages to Python 3

Fix sorting key for rdefs in schema viewer With changeset 234ca3cbbb46, clicking in the schema of an entity with cubicweb in py3 on "vue en boite" will probably result in an infinite spinner (which implies cw > 3.26) What happened ? This "vue en boite" used to work at least until... hg diff -c a8c1ea390400 cubicweb/schema.py @@ -993,10 +992,6 @@ class CubicWebRelationSchema(PermissionM return False return True - @deprecated('use .rdef(subjtype, objtype).role_cardinality(role)') - def cardinality(self, subjtype, objtype, target): - return self.rdef(subjtype, objtype).role_cardinality(target) - class CubicWebSchema(Schema): """set of entities and relations schema defining the possible data sets But, wait ... If I open a shell on an instance of cw 3.24 something seems off >>> list(schema['CWUniqueTogetherConstraint'].relation_definitions())[0][0].cardinality # <bound method CubicWebRelationSchema.wrapped of <constraint_of [CWUniqueTogetherConstraint,CWEType]>> We have been sorting on a method the whole time ? Is it possible what were the effects ? 1) We cannot sort function can't we ? >>> def adder(i): return lambda x: x+i >>> sorted(map(adder,range(10))) [<function __main__.<lambda>>, <function __main__.<lambda>>, ... Yes we can. 2) what does it means. >>> { adder(1) : 1 } Out[19]: {<function __main__.<lambda>>: 1} In fact the function object as a __hash__ method (which is practical for making memoizers (cache)), and return truly random results (pseudo random). My take on this patch is relations have NEVER been sorted by cardinality. No one never ever noticed. Hence, I propose to not fix a bug that never was reported.

Flake8 cubicweb/web/schemaviewer.py

[py3] changing unicode to str py2 support being dropped, passing the code in full py3 str/bytes syntax

[py3] Use sorted(key=...) instead of sorted(cmp=...)

Merge with 3.26

Added tag 3.26.11, debian/3.26.11-1 for changeset 633ca84bea58

[pkg] Version 3.26.11

Added tag debian/3.26.10-1 for changeset 0ce26fb5ab48

[debian] New upstream release

[debian] Drop override_dh_auto_install about cubicweb-ctl The script should be installed normally as it is a setuptools' entry point.

[debian] Remove test/doc Build-Depends We are not actually running tests during package build. (This was disabled for python2, now it is also for python3.) And having these build-depends makes it hard to rebuild the package.

[fix] parse cube version number without space in them

Install patched yapps for test from an http archive Instead of git which require git to be installed. Also downloading archive is faster than cloning the repository.

[server/test] make test filename uniques To avoid these pytest error when collecting the whole test suite: import file mismatch: imported module 'unittest_utils' has this __file__ attribute: cubicweb/cubicweb/server/test/unittest_utils.py which is not the same as the test file we want to collect: cubicweb/cubicweb/test/unittest_utils.py Move cubicweb/server/test/unittest_security.py to cubicweb/server/test/unittest_security.py and cubicweb/test/unittest_utils.py to cubicweb/test/unittest_server_utils.py

Merge 3.26

[dataimport] Fix case when extid is text in use_extid_as_cwuri() Extid can be bytes or text. This avoid AttributeError: 'str' object has no attribute 'decode'

[doc] fix key used in the hook example The hook's regid is check_no_subsidiary_cycle.

[doc] set_operation has been replaced by add_data See the changelog https://cubicweb.readthedocs.io/en/3.26/changes/changelog/#id14

[doc] check_cycle is a standard function

[doc] fix several typos

[pkg] make cubicweb[crypto] depends on pycryptodome instead of pycrypto pycrypto isn't maintained anymore, the last release 2.6.1 is from 2014. Use the drop-in replacement fork pycryptodome instead. pycryptodome is packaged in debian starting from stretch-backports.

[crypto] Encode unicode strings in _cypherer() pycrypto accept both bytes or string but pycryptodome, which will be introduced in next changeset, doesn't accept this. For backward compatibility, encode unicode strings in _cypherer()

[ldapfeed] FIX: Unique Key violation when synchronizing with LDAPfeed What was happening ================== The bug appears when ldapfeed tries to insert a user while another user exists exists with a different source. Simple use case to reproduce: - create a local user in cubicweb (source=system) - sync with ldap - ldapfeed will stop complaining user already exists. Without next patch the test MUST fail with message: cubicweb/server/sources/native.py:714: UniqueTogetherError The ldapfeed is thus stopped ignoring any further ldap entries. The proposal ============ Prior to this patch, the insertion was trying to create all CWUser with the computed login from eeimporter.extid2eid (method process of DataFeedLDAPAdapter). When a CWUser existed with a different cw_source ("system" for user created with cubicweb for instance), it created a conflict. To avoid collisions, in the extentities_generator method a bypass was added at the insertion layer. Prior to insertion the absence of the computed login is checked on a list of all existing login from a different source. If collision is detected, we skip the ldap record. By short circuiting at the CWUser entity insertion level we also avoid to treat CWGroup and EmailAddress related to this user. Hence ensuring a behaviour that will not break existing instances. (conservative approach: faced with ambiguity better do nothing than guess). An error message is added stating explicitly the conflict.

Skip tests for ldapsource with python >= 3.7 Until someone works on fixing these, this should make our CI green again. I tried to use setupModule() to check for python version, but pre_setup_database() is apparently called even when a SkipTest exception is raised there. So handle this in that method. (grafted from 4d68d20427dee4b6751a0f1f5511fec2a04f4782)

Flake8 crypto module

Make crypto module python3-compatible * Remove usage of unicode() and decode the base64-encoded string in encrypt(); * Encode the string received in decrypt() as (I supposed) it should come from the result of encrypt(). Add tests for this module along the way.

[mod] make ViolatedConstraint actually display useful information Move from: (Pdb++) raise some_exception *** ViolatedConstraint: To: (Pdb++) raise some_exception *** ViolatedConstraint: constraint 'cstr56c2ab4b3154f21d08b067742ce5bd9d' is being violated by the query 'ALTER TABLE cw_Bibliography ADD CONSTRAINT cstr56c2ab4b3154f21d08b067742ce5bd9d CHECK(cw_item_type IN ('journalArticle', 'note', 'book', 'thesis', 'film', 'web page', 'manuscrit', 'tapuscrit'))'. You can run the inverted constraint on the database to list the problematic rows. And save hours of debugging to actually understand what is going on.

Fix flake8 errors/warnings about import in cubicweb/_exceptions.py We either ignore errors in case of name re-exports and drop re-exports from old backwards compatibility. We fix the only occurrence of NoSelectableObject being imported from cubicweb in tests and update the import to use lgc instead.

add comment and # noqa on used import

remove unused import

[autopep8] E305 - Expected 2 blank lines after end of function or class

[autopep8] E303 - Remove extra blank lines

[autopep8] E302 - Add missing 2 blank lines

[autopep8] E301 - Add missing blank line

[enh] display CWConstraint type in its repr This will change CWConstraint repr from something like: <Entity CWConstraint 314282 [] at 140127700141904> To: <Entity CWConstraint 314282 of type UniqueConstraint [] at 140127700141904> To help improve debugging UX a little bit.

[entities] display CWConstraint type in its repr

[changelog] document pyramid.ini automatic generation

Flake8 cubicweb/pyramid/test/test_hooks.py

[pyramid/doc] bad docstring

[pyramid/misc] remove useless variable

[pyramid/test] add test for pyramid.ini generation

Added tag 3.26.10 for changeset 74cc5de1ee6c

[pkg] Version 3.26.10

Move CWSchemaTC to RQLExpressionTC The test actually doesn't require a cubicweb schema, except for testing EmailAdress which is out of scope of the test (testing RQLExpression.transform_has_permission()). Just move the test in existing RQLExpressionTC inheriting from TestCase and rename the tests to be more explicit.

[skeleton] Drop py27 tox environment Since we dropped py2 support from cubicweb, it does not make much sense to keep it in skeleton from now on.

[skeleton] Do not ship Debian and RPM packaging files in sdist

[skeleton] Add a check-manifest tox environment

Fix pyramid tests Followup fa292e9 which require cubicweb.session.secret to be set.

Fix flake8 and check-manifest Followup fa292e9

Merge 3.26 This fixes tests with psycopg2

DeprecationWarning: In future versions of Waitress clear_untrusted_proxy_headers will be set to True by default. You may opt-out by setting this value to False, or opt-in explicitly by setting this to True. Source: https://docs.pylonsproject.org/projects/waitress/en/stable/arguments.html?highlight=clear_untrusted_proxy_headers > This tells Waitress to remove any untrusted proxy headers ("Forwarded", > "X-Forwared-For", "X-Forwarded-By", "X-Forwarded-Host", "X-Forwarded-Port", > "X-Forwarded-Proto") not explicitly allowed by trusted_proxy_headers. According to grep we don't use any of those headers so let's turn it on for security reasons.

DeprecationWarning: The default pickle serializer is deprecated as of Pyramid 1.9 and it will be changed to use pyramid.session.JSONSerializer in version 2.0. Explicitly set the serializer to avoid future incompatibilities . See "Upcoming Changes to ISession in Pyramid 2.0" for more information about this change. As describe here https://docs.pylonsproject.org/projects/pyramid/en/1.10-branch/narr/sessions.html#pickle-session-deprecation use a serializer that fallback on pickle if needed to avoid impacting users.

[pyramid/enh] generate pyramid.ini "create" and on "pyramid" command if needed

DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead.

Account for new psycopg2 exception classes mapping From psycopg2 >= 2.8, specific exceptions are raised corresponding to postgresql errors. E.g. a CheckViolation exception is raised instead of a generic IntegrityError previously when a constraint violation occurs. The way we intercept database errors, especially for constraint violation, is not compliant with that because we do not catch subclasses of IntegrityError in native source's doexec() method. We fix this by checking for the presence of IntegrityError error in exception class's mro. This is still overcomplicated and clumsy, because we still use string comparison, but this is the best we can do as far as I know. (A better fix would be 'isinstance(ex, IntegrityError)' but we have no engine-independent error classes, so this is not possible. Something like sqlalchemy's DBAPI Errors [1] might help: https://docs.sqlalchemy.org/en/latest/errors.html#dbapi-errors)

[cubicweb-ctl] remove "cubicweb-ctl wsgi" command following pyramid standardization

Use secure hash algorithm in WebConfiguration.sign_text Fix: PendingDeprecationWarning: HMAC() without an explicit digestmod argument is deprecated. The default hash algorithm used by hmac.new is md5. As of today, md5 is so weak that it's the equivalent of plaintext and can't be considered to be secured at all. Therefor, we switch to a secure hash algorithm. The rational for choosing sha3_512 is: * the recommended algorithm is at least sha_256 * the stronger, the more secured and sha3_512 is the stronger available * thinking about the future this should keep this part of the code safe long enough before people think about checking it again You can read more about choosing a secure hash algorithm in the NIST recommendations https://csrc.nist.gov/Projects/Hash-Functions/NIST-Policy-on-Hash-Functions This code modification should normally be transparent since check_text_sign is exactly this code 'self.sign_text(text) == signature' and that sign_text is only used in combination with it. The only impact is that the hash is going to move from 32 char to 128 which might make html page a bit bigger and that sha3_512 is slow to compute (which is a good thing for security)

[enh] don't catch all exceptions in notification hooks during tests

[doc] add a reference to static-messages.pot usage

[doc] Clarify sentences

[doc] Fix format and typo

Fix DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated

Fix DeprecationWarning: invalid escape sequence

[devtools/testlib] avoid hidding AttributeError in create_user() commit() might raise a AttributeError too. Use getattr(req, 'cnx', req) instead, which is a form already used to get the real cnx in some code: cubicweb/rset.py:577: cnx = getattr(self.req, 'cnx', self.req) cubicweb/schema.py:353: with getattr(_cw, 'cnx', _cw).security_enabled(read=False): We could use if hasattr(req, 'commit') here too but it lead to 3 additionals lines. Maybe we should have commit() and rollback() on cubicweb.web.request.ConnectionCubicWebRequestBase too ?

Fix DeprecationWarning: invalid escape sequence \

DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead

[mod] remove backward compatible code for passlib and force modern version

DeprecationWarning: Please use assertEqual instead.

DeprecationWarning: Please use assertRaisesRegex instead.

DeprecationWarning: inspect.getargspec() is deprecated since Python 3.0, use inspect.signature() or inspect.getfullargspec()

[README] add testing instructions

Add pytest-subtests to dev requirements This pytest plugin adds support for unittest's TestCase.subTest (for Python >= 3.4). Since we we now only support python3 and since we use a fair amount of these, let's benefit of better reporting by using this plugin.

[test] use unittest.mock instead of mock library Now that we use Python 3 only, this is possible.

Drop python2 support This mostly consists in removing the dependency on "six" and updating the code to use only Python3 idioms. Notice that we previously used TemporaryDirectory from cubicweb.devtools.testlib for compatibility with Python2. We now directly import it from tempfile.

Merge with 3.26

Remove unused imports in cubicweb.pyramid.config

Added tag 3.26.9 for changeset 4d6909de765a

[pkg] Version 3.26.9

[pyramid/security] use cryptographically secure random generator Based on django source code in case SystemRandom is not available. According to python documentation: https://docs.python.org/2/library/random.html > Warning > The pseudo-random generators of this module should not be used for security > purposes. Use os.urandom() or SystemRandom if you require a cryptographically > secure pseudo-random number generator.

Reclosing branch after merge

Merging heads of old, closed branch

Reclosing branch after merge

Merging heads of old, closed branch

[doc/changes] document that legacy cube support has been dropped

[doc] replace legacy import to new style cube import in various places

[web/views] drop deprecated module cubicweb.web.views.timeline

[web/views] drop deprecated module cubicweb.web.views.massmailing

[web/views] drop deprecated module cubicweb.web.views.isioc

[web/views] drop deprecated module cubicweb.web.views.embedding

[web/views] drop deprecated module cubicweb.web.views.igeocodable

[pyramid/core] drop fallback import of legacy cubes

[cwconfig] drop importing legacy cubes This finally drop support for legacy cubes. In cwconfig, don't load modules in the "cubes" namespace. In cube_pkginfo() handle CW_MIGRATION_MAP which wasn't working with new style cube. Drop all method specific to legacy cubes importer: cubes_search_path(), extrapath(), cls_adjust_sys_path() Drop environment variables related to legacy cubes: CW_CUBES_PATH and CW_CUBES_DIR

[doc] better documentation for "cubicweb-ctl newcube" cubicweb-ctl newcube create cubicweb-<name> in current directory.

[test] make unittest_cwconfig.py does not depend on legacy cube machinery By dropping legacy cube tests in various places.

[devtools/test] drop legacy cube i18n tests test_i18ncube_legacy_layout() is droped and make others tests uses a new style cube "cubicweb_i18ntestcube", so it doesn't depends on legacy cube machinery.

[server/test] make unittest_migractions.py use new style cubes MigrationTC used old cube layout in cubicweb/server/test/data-migractions/cubes, move them to new style cubes as "cubicweb_<cubename>" in "apphome" (cubicweb/server/test/data-migractions/) which is added to PYTHONPATH by CubicWebTC.

[cwconfig] drop _cube_modname Since we drop support for legacy cubes, this is equivalent to _cube_pkgname()

[cwconfig] drop legacy cube importer We don't want to support legacy cubes anymore.

Drop more deprecated code This follows up on changeset a8c1ea390400, in which code deprecated using logilab.common.deprecation got dropped. Now we also drop code deprecated using stdlib's warn(<msg>, DeprecationWarning). Notice that, as a consequence of dropping old/new etypes aliases in cubicweb/schema.py, we drop the import ETYPE_NAME_MAP (no longer needed); but since other modules imported that name from cubicweb.schema, we need to update the import statement to use "cubicweb" directly.

Flake8 cubicweb/cwvreg.py

Drop deprecated "boxes" and "contentnavigation" registries

Drop deprecated CWCache entity type

Update i18n after "recent" changes

Drop repair_file_1-9_migration.py

Drop a left-over 3.22 deprecation warning

[doc] fix reference to ~src/cubes in tutorial ~src/cubes refer to the $HOME/cubes directory of "src" user while ~/src/cubes refer to $HOME/src/cubes directory of current user.