[debug-toolbar/display_source_code] add function to generate html link to source code

[debug-toolbar/display_source_code/security] add security mechanism to only read whitelisted files Closes #17256791

[debug-toolbar/display_source_code] add helper to render link to source file Closes #17256791

[debug-toolbar/display_source_code] add a pyramid view that display syntax highlighted python source file This will be used for tool building for easier debugging. Closes #17256791

[mod] allow to pass generic additional arguments to pygments HtmlFormatter

[debug/fix] ensure that not syntax highlighted code is a string Otherwise it could be in another unrendered form that makes marko complains. Closes #17256791

[debug-toolbar] add registry decisions debug panel Closes #17219866

Increase needed version of logilab-common to >= 1.5.0

[debug-toolbar] add registry panel Closes #17219866

[debug-toolbar] add sql panel Closes #17219873

[debug-toolbar] add cw general panel with controller Closes #17219897

[debug-toolbar] make linter happy

[pyramid/ctl/debugtoolbar] automatically include custom panels on -t

[debug-toolbar/rql] display sql queries generated by rql ones

[debug-toolbar/rql] add RQL panel Closes #17219673

[debug/emit/rql] add RQL debug channel and emit queries This is used for the RQL debug panel but can be used as a generic mechanism for several tools.

[debug/source_highlight] rename highlight to highlight_terminal

[debug/source_highlight] add highlight_html and generate_css for debugtool panels

[debug/rql] bind a uniq token per rql to trace its decomposition This is aimed to be used by the RQL debug panel (and the SQL one later on) but can also be used by other debugging tools.

[debug] add a new channel events mechanism for debugging

[ctl] allow to specific instance name for instance commands in $CW_INSTANCE Closes #17253994

[cubicweb/utils] add QueryCache.__contains__() to improve dict-like behavior. Closes #255426

[migrations/pdb] add to every failing migration operation a "p(db)" option Instead, the migration command will just crash without offering the possibility of the user to debug or continue the migration. Closes #17219772

[pyramid/ctl] add a new option to activate the debugtoolbar (-t) While this toolbar isn't yet very integrated with CW, it integrates an inline debugging shell like werkzeug for flask or django_extensions which greatly helps debugging on exception. It can already be manually activated by writting "pyramid.includes = pyramid_debugtoolbar" but it's hidden somewhere in the documentation and not very accessible and annoying to do. Closes #17219765

[changelog] add missing information to the 3.27 changelog

Merge 3.26

[debug] add ALL possibility to --dbglevel

[ux] display instance name in suggested upgrade command

[migration/pdb] display traceback instead of only the exception for easier debugging Closes #17219820

[migration/pdb] add option to use pdb.post_mortem if traceback is provided Post mortem is a mode where the pdb shell is opened **where** the exception as occured instead at the breakpoint for set_trace. This is way more useful for debugging for the user because is will have the full context of the error. Closes #17219827

[migration/shell] select ipdb if present on (d)ebug mode Closes #17219833

[mod] move get_pdb to utils.py

Add a migration function in order to relocate bfss Related to https://www.cubicweb.org/ticket/1903304

[pyramid/debug] on every request display request path and selected controller This will display lines like: 2019-06-12 16:26:57 - (cubicweb.pyramid.bwcompat) INFO: REQUEST [view] '/wiki/334037' selected controller <cubicweb.web.views.basecontrollers.ViewController object at 0x7f133802ae90> at /root/.virtualenvs/abreton/local/lib/python2.7/site-packages/cubicweb/web/views/basecontrollers.py:120 2019-06-12 16:26:59 - (cubicweb.pyramid.bwcompat) INFO: REQUEST [data] '/data/ea5eb3b6f89fba0ff4b671093c88d3dd/images/cartouche-mur.jpg' selected controller <cubicweb.web.views.staticcontrollers.DataController object at 0x7f1332a84d50> at /root/.virtualenvs/abreton/local/lib/python2.7/site-packages/cubicweb/web/views/staticcontrollers.py:179 The make debugging easier as this isn't done already. Most other web frameworks do something similar for the developper to be able to understand what is happening right now. Closes #17219741

[logging/debug] move transaction operations logs from self.debug to DBG_OPS There were a mixing between displaying transaction operations log on logger.debug and only when DBG_OPS was on, uniformize everything behind DBG_OPS. Closes #17229126

[debug] syntax highlight SQL and RQL debug output This prevent DBG_RQL and DBG_SQL output to looks like a gigantic blob of white text. Do this only if we detect that we are in a tty and that pygments is installed. Closes #17222885

[logging] send logs by default to stdout Following the move to have commands only working on foreground sending logs to a file by default doesn't make much more sens anymore so send them to stdout by default and add a new option to send them to a file if needed

[cubicweb-ctl] backport --dbglevel option of pyramid to all instance commands Closes #17219653

[cubicweb-ctl] backport --loglevel option of pyramid to all instance commands

[cubicweb-ctl/fix] correctly get exception traceback_ for pdb.post_mortem In python 3 the behavior of sys.exc_info had a very subtle change: - in python 2 you can call if whenever you want after a try/except statement and you'll get information about this last raise - ipython 3, once you get out of try/except, sys.exc_info is cleaned and you'll get (None, None, None) Hardened the test to avoid this error from happening again.

Document mercurial configuration for contributing * how to use master/review repositories * how to send the "Available at" command in patchbomb emails * how to add the "cubicweb" flag in patchbomb emails * how to use our "jenkins" mercurial extension Closes #17243538

Add documentation on workflow permission

Remove undefined function in documentation

Merge 3.26

[pyramid/ctl] pyramid command will always run in foreground from now on Daemonization used to make sens in the past, but today "pyramid" command is only used for dev and should never be used for deployement (you should use a wsgi server for that instead) so daemonization doesn't fit any use case anymore. Closes #17232923

[clean] remove pyramid warning about looping task This warning isn't useful anymore.

[doc] add instruction to re-enable ckeditor

[fix] reference to underclared and unused variable kwargs

Avoid to update inlined relation column to NULL when deleting entities When deleting entities, cubicweb run a rql DELETE on all relations to trigger hooks. For an inlined relation this also mean set the column to NULL. This operation may fail if there's additional constraints on the column. Also this is a weird and useless behavior since deleting the entity row will by definition delete the relation. We still doesn't handle the case where both subject and object are going to be deleted because rows need to be deleted in a particular order that cubicweb doesn't handle. Add a test checking UPDATE does not occur but hooks are correctly called. Closes #17236690

Drop useless ConstraintInsertionTC This test does nothing and is here from the begining of repo history. Now it raise an error "TypeError: Skipped expected string as 'msg' parameter, got 'SkipTest' instead. Perhaps you meant to use a mark?" Just drop it.

Backed out changeset 741dc2590f90 It was for cube s3storage, but this piece of information was apparently not in the email (used for review), so this patch was published in the wrong repository. :-/

[.gitlab-ci] initial version (tox targets)

Merge with 3.26

Added tag debian/3.26.14-1, 3.26.14 for changeset 172f683a84f6

[pkg] version 3.26.14

[py3] Pass bytes as "msg" to smtplib.SMTP.sendmail() When passing a unicode string to smtplib.SMTP.sendmail() as "msg" argument, there is an implicit bytes encoding using "ascii" encoding in python3. Of course this does not work if the string contains non-ASCII characters. In fact, config's sendmails method intent to pass bytes to smtplib.SMTP.sendmail() as it uses msg.as_string() method. Unfortunately, in python3, this method returns a unicode string whereas it returns a bytes string in python2; we thus fix this by calling as_bytes() method on python3. As there is no "as_bytes" method in python2, we need to handle python2 compatibility by hand and either call as_string() or as_bytes(). In testlib, where we mock smtplib.SMTP, we need to keep the "msg" argument of Email class (defined in testlib as well) a unicode string. Otherwise, it fails to be parsed by email.message_from_string() (from stdlib) if it is bytes on python3.

[debian] Cleanup d/source/options from now gone symlinks

[pkg] Version 3.27.0.a2

[debug/clean] remove unused DBG_MS flag

Avoid using gone hooks_control() in migration This deprecated function got dropped in a8c1ea390400. Remove unused import in 3.10.9_Any.py migration; replace usage in bootstrapmigration_repository.py by non-deprecated form.

[tox] Remove --ignore in check-manifest check All symlinks have been dropped in previous changesets.

[doc] link to 3.27 (and missing 3.26) pages

[pkg] Version 3.27.0a1

[test] Replace symlinks by real copies This solves a "python setup.py build" issue.

[pkg] Version 3.27.0a0

Merge with 3.26

Added tag debian/3.26.13-1, 3.26.13 for changeset 1fc684253207

[pkg] Version 3.26.13

[test] Replace symlinks in legacy_cubes by real copies This solves a "python setup.py build" issue on my machine. Copying these files should not be a big deal because they have been dropped in the "default" branch and we would not touch them in 3.26 branch.

[pkg] Prune packaging files from sdist

[pkg] Fix spelling mistake in doc-base abstract

[pkg] Fix doc-base section As pointed by Lintian, the “Apps” section is only used in menu, not in doc-base. We can just remove it.

[pkg] Move lintian-overrides file to debian/source directory Just use the now preferred location.

[pkg] Tidy substvars usage in control file The documentation package was missing a Built-Using field to record the provenance of the templates. Empty packages or meta packages do not require Depends on a specific Python version, so we can remove the relevant substvars.

[pkg] Specify priority “optional” instead of the obsolete “extra” Quoting Lintian, “Since Debian Policy version 4.0.1, the priority extra has been deprecated.” So let's use “optional” instead.

[pkg] Switch to Debian source format 3.0 (quilt) This forces us to base the Debian package on the source of the Python package (as produced by running `python3 setup.py sdist`). While it might seem cumbersome, this greatly reduces likelyhood of mismatch between an installation via `pip` and one using the Debian package. `dpkg-source` will also document for us what is currently in the source repository but not in the Python package. Currently the missing file are: PKG-INFO cubicweb/sobjects/test/data/cubicweb_comment/schema.py cubicweb/sobjects/test/data/cubicweb_comment/__init__.py cubicweb/sobjects/test/data/cubicweb_comment/__pkginfo__.py cubicweb/sobjects/test/data/cubicweb_card/schema.py cubicweb/sobjects/test/data/cubicweb_card/entities.py cubicweb/sobjects/test/data/cubicweb_card/__init__.py cubicweb/sobjects/test/data/cubicweb_card/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_comment/schema.py cubicweb/server/test/data-migractions/cubicweb_comment/__init__.py cubicweb/server/test/data-migractions/cubicweb_comment/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_localperms/schema.py cubicweb/server/test/data-migractions/cubicweb_localperms/__init__.py cubicweb/server/test/data-migractions/cubicweb_localperms/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_basket/schema.py cubicweb/server/test/data-migractions/cubicweb_basket/__init__.py cubicweb/server/test/data-migractions/cubicweb_basket/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_comment/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_comment/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_comment/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_localperms/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_localperms/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_localperms/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_basket/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_basket/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_basket/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_tag/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_tag/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_tag/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_card/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_card/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_card/__pkginfo__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_file/schema.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_file/__init__.py cubicweb/server/test/data-migractions/migratedapp/cubicweb_file/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_tag/schema.py cubicweb/server/test/data-migractions/cubicweb_tag/__init__.py cubicweb/server/test/data-migractions/cubicweb_tag/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_card/schema.py cubicweb/server/test/data-migractions/cubicweb_card/__init__.py cubicweb/server/test/data-migractions/cubicweb_card/__pkginfo__.py cubicweb/server/test/data-migractions/cubicweb_file/schema.py cubicweb/server/test/data-migractions/cubicweb_file/__init__.py cubicweb/server/test/data-migractions/cubicweb_file/__pkginfo__.py cubicweb/test/data-rewrite/cubicweb_localperms/schema.py cubicweb/test/data-rewrite/cubicweb_localperms/__init__.py cubicweb/test/data-rewrite/cubicweb_localperms/__pkginfo__.py cubicweb/test/data-rewrite/cubicweb_card/schema.py cubicweb/test/data-rewrite/cubicweb_card/entities.py cubicweb/test/data-rewrite/cubicweb_card/__init__.py cubicweb/test/data-rewrite/cubicweb_card/__pkginfo__.py The current manifest will duplicate several files that are stored as symlinks in the Mercurial repository, hence the long list of ignored files in `extend-diff-ignore`.

[debian] Update description of cubicweb-ctl* packages init scripts are no longer shipped. Avoid mentionning "start" and "stop" command which should not be used in production environments.

[debian] Introduce a cubicweb-ctl3 binary package This packages conflicts with cubicweb-ctl binary which uses the python2 library. It is meant to ease upgrade of existing installation during the migration from python2 to python3: in particular, by installing cubicweb-ctl3, scripts calling "cubicweb-ctl" command should still work as before.

[cubicweb-ctl] respect sys.exit status code when aborting a command When exploring the stack of all calls to a cubicweb-ctl command, it has been discovered than on a KeyboardInterrupt and on a SystemExit exception the base class InstanceCommand (for commands that works on one instance) will always set the return code of cubicweb-ctl to 8: this mean that if another command do a `sys.exit(some_code)` the exit code will be ignored and overwritten by '8'. This behavior is not intuitive, apparently not documented and doesn't seems to have any justification. It also prevent commands from exciting with different return codes which could be a desired behavior in the situation of scripting.

[test] Add an "actionverb" attribute to test commands

[test] use self.assertRaises() in cwctl tests

[test] ensure mocking is stopped in cwctl tests Either use a decorator or ensure that cleanup is performed. This is so as to prevent global state modification.

[cubicweb-ctl] add '--pdb' global option to launch (i)pdb on exception

[test] Rename TestCommand to avoid PytestCollectionWarning

[pkg] Add new autopkgtest for skeleton packaging When running `cubicweb-ctl newcube`, the generated template provides debian packaging. So let's add automated tests for that using autopkgtest. The new test will generated a new cube, build a source tarball, build the package, try to install it, see if the Python 2 and 3 modules are available and even run autopkgtest against the newly created packages. Along the way it will also print information about the generated package: buildinfo, package content, and lintian report.

[skeleton] Update Debian packaging template Here are multiple updates to the Debian packaging template provided when running `cubicweb-ctl newcube`: * Switch to source format 3.0 (quilt). * Switch to debhelper 9. * Switch to dh-python. * Add Python 3 packages. * Name the binary packages `python-cubicweb-CUBENAME` and `python3-cubicweb-CUBENAME` instead of just `cubicweb-CUBENAME` (which is still the source package). * Populate Depends using dh_python{2,3} support for Python requirements. * Run test suite at build time using pytest. * Add autopkgtest to run test suite against the installed package. * Bump Standards-Version to 4.3.0.

[test] Use --short-description when testing newcube command

[devtools] Allow to specify short desc on `newcube` command line In order to implement automated testing of `cubicweb-ctl newcube`, we need to avoid any user interaction. So we add a `-s` switch to specify a short description on the command-line instead of requiring an input.

[pkg] Add new autopkgtest for skeleton packaging When running `cubicweb-ctl newcube`, the generated template provides debian packaging. So let's add automated tests for that using autopkgtest. The new test will generated a new cube, build a source tarball, build the package, try to install it, see if the Python 3 module is available and even run autopkgtest against the newly created packages. Along the way it will also print information about the generated package: buildinfo, package content, and lintian report.

[cubicweb-ctl] move to accepting only once instance name per command The rationals behind this decision are: - while in the past managing all instances sytem wide made a lot of sens, pratices have evolved today and we've moved to managing one instance by one - this makes things easier to debug since commands since using them on several instances were making this harder (errors hidden in the middle) - also solve the problem of the return code to have, before it was always 0 which prevented to do things like: ipython --pdb $(which cubicweb-ctl) $command $instance or shell scripts that used it - this simplify the code and is always good to take

[pkg] Run all unit tests in autopkgtest We previously forgot to copy `tox.ini` alongside the tests. As this file configures pytest pattern matching rules, we were not running quite a few tests. This is now fixed. The added tests required some adjustments in the Debian dependencies. Sadly, not all tests currently pass. It seems there are some ordering dependencies between the tests in regards to how data are loaded. Fixing this probably would probably be better debugged by ensuring the test suite does not fail when using pytest random-order plugin.

[pkg] Stop running unit tests from skeleton The test files shipped as part as the skeleton for `cubeweb-ctl newcube` are not meant to be run as part of our test suite!

[tests] Use 16 bytes key when testing Blowfish The version of Cryptodome currently in Debian only accepts Blowfish keys with at least 5 bytes. This is a bug (it should accept 4 as it did before) that has since been fixed upstream: https://github.com/Legrandin/pycryptodome/commit/93912230f3c39e09f4038cb17e301468687c6538 So we work around this issue by using a 16 bytes key instead (which happens to be the minimum recommended length).

Use time.process_time() instead of deprecated clock() This fixes: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead

[web] Make the time separator configurable in JQueryDateTimePicker We add a "separator" argument to JQueryDateTimePicker which will be used when creating the underlying JQueryTimePicker instance so that the user can control how time is displayed by the widget. This is very similar to the "timesteps" argument that's already present.

Added tag 3.26.12, debian/3.26.12-1 for changeset 4531a266f8b2

[pkg] Version 3.26.12

[autoform] Fix display_fields handling This follows-up on changeset b2ceb483e056 (present in 3.25 as well), in which AutomaticEntityForm.editable_attributes() was turned into a generator. In this method, in case display_fields is not None, we previously returned a list of (rtype, role); this was changed into a yield, but the change was missing a return after the loop in order not to go through the remainder of the function. Add tests for editable_attributes() method.

Flake8 cubicweb/web/views/autoform.py Fixes: cubicweb/web/views/autoform.py:703: [E122] continuation line missing indentation or outdented cubicweb/web/views/autoform.py:704: [E122] continuation line missing indentation or outdented cubicweb/web/views/autoform.py:819: [W504] line break after binary operator cubicweb/web/views/autoform.py:820: [E125] continuation line with same indent as next logical line cubicweb/web/views/autoform.py:961: [W504] line break after binary operator cubicweb/web/views/autoform.py:962: [E126] continuation line over-indented for hanging indent

[py3] unicode() -> six.text_type in autoform

Added tag debian/3.26.11-2 for changeset e7eb914df71d

[debian] Release 3.26.11-2

[test] Require pycryptodomex, not pycryptodome This follows up on changeset 5b0ce10a7046.

[debian] Mention Lintian warnings fixes from previous changesets

[debian] Remove unused/redundant entries from debian/cubicweb-ctl.dirs * bash completion entry produces a lintian warning "package-installs-into-obsolete-dir etc/bash_completion.d/", and it does not install bash completion. * doc directory should be handled automatically.

[debian] Make descriptions of python-cubicweb and python3-cubicweb uniform Thus solving lintian warning "description-synopsis-starts-with-article".

[debian] Mention that -postgresql-support binaries are dependency package Fixing lintian warning "empty-binary-package".

[debian] Add ${misc:Depends} where missing Fixes lintian warning "debhelper-but-no-misc-depends".

[debian] Set Section: python for python- binary package This is to fix a Lintian warning.

[debian] Install cubicweb-ctl from python2 build Previously, the binary package was empty. Now it is bound to the python2 package as support for python3 is "fresh". In order python2 and python3 packages to be co-installable, we drop the cubicweb-ctl file from both packages.

[debian] Introduce python3-cubicweb and python3-cubicweb-pyramid binary packages This is the bare minimum to have a working cubicweb on python3. Further work is done in default branch.

[skeleton] Update Debian packaging template Here are multiple updates to the Debian packaging template provided when running `cubicweb-ctl newcube`: * Switch to source format 3.0 (quilt). * Switch to debhelper 9. * Switch to dh-python. * Switch to Python 3. * Name the binary package `python3-cubicweb-CUBENAME` instead of just `cubicweb-CUBENAME` (which is still the source package). * Populate Depends using dh_python3 support for Python requirements. * Run test suite at build time using pytest. * Add autopkgtest to run test suite against the installed package. * Bump Standards-Version to 4.3.0.

[test] Use --short-description when testing newcube command

[devtools] Allow to specify short desc on `newcube` command line In order to implement automated testing of `cubicweb-ctl newcube`, we need to avoid any user interaction. So we add a `-s` switch to specify a short description on the command-line instead of requiring an input.

[pkg] Remove build dependency on dh-systemd As suggested by Lintian, remove build dependency on obsolete package dh-systemd. Instead, specify a more precise version of debhelper 9 that added support for systemd.

[config] Raise in case of failure to send emails when in test mode Since, for some reason, exception log messages are not visible when running tests, it's very hard to debug when sendmails() method fails during tests. So, as in some other places, let's raise the exception when in test mode.

[doc] Update documentation to match current Debian packages

[pkg] Remove transitional packages We can take the opportunity of the switch to Python 3 to get rid of old transitional packages. Let's do it. :)

[pkg] Use sections from requires.txt to populate Recommends and Suggests As Denis Laxalde pointed out, dh_python can also generate Recommends and Suggests from Python package names. So let's use that instead of manually populating these fields in `debian/control`. Optional dependencies are currently specified in `setup.py` grouped by feature. These dependency groups are turned into sections in `requires.txt`. Thankfully `dh_python3` has options to populate Recommends or Suggests with all package from a given section. `debian/rules` now contains a list of which sections should go to Recommends and which section should go to Suggests. Because such extra list easily gets out-of-sync, we add a third list for ignored sections, and ensure that all sections currently in `requires.txt` get a mentioned in `debian/rules`. Here are the results compared to the previous version with explicit Recommends and Suggests (only listing Python packages): |==============================================================| | only in previous | common | only in new | |==============================================================| | Recommends | |--------------------------------------------------------------| | | python3-docutils | | | python3-fyzz | | | | python3-imaging | | | | | python3-pycryptodome | | | | python3-pyramid | | | | python3-pyramid-multiauth | | | python3-pysqlite2 | | | | | python3-rdflib | | | | python3-repoze.lru | | | python3-simpletal | | | | | python3-vobject | | | | python3-waitress | | | python3-werkzeug | | | | | python3-wsgicors | | |--------------------------------------------------------------| | Suggests | |--------------------------------------------------------------| | | | python3-pil | We also lose versioned dependencies which should not really be an issue for Recommends and Suggests.

[crypto] Use Cryptodome namespace instead of Crypto PyCryptodome comes in two flavors: “an almost drop-in replacement for the old PyCrypto library” and “a library independent of the old PyCrypto”. The former uses the Crypto namespace, and is shipped as `pycryptodome` while the latter uses Cryptodome instead and lies in the `pycryptodomex` package. Given the reason to switch to PyCryptodome is that PyCrypto in unmaintained, its probably better to avoid any mistake and mandate the specific usage of the Cryptodome namespace by requiring `pycryptodomex` instead of `pycryptodome`. A more present reason is that Debian buster will only provide a package with the separate namespace flavor. The current Recommends is not working with the current code. Although it's important to note that the package name will probably have to be changed to `python3-pycryptodomex` once https://bugs.debian.org/886291 is solved.