Fix broken flake8 configuration and flake8 errors which were hidden by this breakage. flake8 --filename options doesn't work as expected: * it's expected to be a shell pattern, using stdlib's fnmatch.fnmatch function internally. This funciton thinks that 'cubicweb/x.py' doesn't match 'cubicweb/x.py' (there must be a reason but that's not the point), hence no file was actually checked ; * as this is a list of pattern, each encountered file is checked against each pattern, leading to run time explosion. So maintain list of files to check in a separated file and give this list to flake8 using unix's xarg command.

[check-manifest]
ignore =
  debian
  debian/*
  cubicweb.spec
  __pkginfo__.py