"""Adapters for native cubicweb sources.
Notes:
* extid (aka external id, the primary key of an entity in the external source
from which it comes from) are stored in a varchar column encoded as a base64
string. This is because it should actually be Bytes but we want an index on
it for fast querying.
:organization: Logilab
:copyright: 2001-2009 LOGILAB S.A. (Paris, FRANCE), license is LGPL v2.
:contact: http://www.logilab.fr/ -- mailto:contact@logilab.fr
:license: GNU Lesser General Public License, v2.1 - http://www.gnu.org/licenses
"""
__docformat__ = "restructuredtext en"
from threading import Lock
from datetime import datetime
from base64 import b64decode, b64encode
from logilab.common.cache import Cache
from logilab.common.configuration import REQUIRED
from logilab.common.adbh import get_adv_func_helper
from indexer import get_indexer
from cubicweb import UnknownEid, AuthenticationError, Binary, server
from cubicweb.server.utils import crypt_password
from cubicweb.server.sqlutils import SQL_PREFIX, SQLAdapterMixIn
from cubicweb.server.rqlannotation import set_qdata
from cubicweb.server.sources import AbstractSource
from cubicweb.server.sources.rql2sql import SQLGenerator
NONSYSTEM_ETYPES = set()
NONSYSTEM_RELATIONS = set()
class LogCursor(object):
def __init__(self, cursor):
self.cu = cursor
def execute(self, query, args=None):
"""Execute a query.
it's a function just so that it shows up in profiling
"""
if server.DEBUG:
print 'exec', query, args
try:
self.cu.execute(str(query), args)
except Exception, ex:
print "sql: %r\n args: %s\ndbms message: %r" % (
query, args, ex.args[0])
raise
def fetchall(self):
return self.cu.fetchall()
def fetchone(self):
return self.cu.fetchone()
def make_schema(selected, solution, table, typemap):
"""return a sql schema to store RQL query result"""
sql = []
varmap = {}
for i, term in enumerate(selected):
name = 'C%s' % i
key = term.as_string()
varmap[key] = '%s.%s' % (table, name)
ttype = term.get_type(solution)
try:
sql.append('%s %s' % (name, typemap[ttype]))
except KeyError:
# assert not schema(ttype).is_final()
sql.append('%s %s' % (name, typemap['Int']))
return ','.join(sql), varmap
def _modified_sql(table, etypes):
# XXX protect against sql injection
if len(etypes) > 1:
restr = 'type IN (%s)' % ','.join("'%s'" % etype for etype in etypes)
else:
restr = "type='%s'" % etypes[0]
if table == 'entities':
attr = 'mtime'
else:
attr = 'dtime'
return 'SELECT type, eid FROM %s WHERE %s AND %s > %%(time)s' % (
table, restr, attr)
class NativeSQLSource(SQLAdapterMixIn, AbstractSource):
"""adapter for source using the native cubicweb schema (see below)
"""
# need default value on class since migration doesn't call init method
has_deleted_entitites_table = True
passwd_rql = "Any P WHERE X is CWUser, X login %(login)s, X upassword P"
auth_rql = "Any X WHERE X is CWUser, X login %(login)s, X upassword %(pwd)s"
_sols = ({'X': 'CWUser', 'P': 'Password'},)
options = (
('db-driver',
{'type' : 'string',
'default': 'postgres',
'help': 'database driver (postgres or sqlite)',
'group': 'native-source', 'inputlevel': 1,
}),
('db-host',
{'type' : 'string',
'default': '',
'help': 'database host',
'group': 'native-source', 'inputlevel': 1,
}),
('db-name',
{'type' : 'string',
'default': REQUIRED,
'help': 'database name',
'group': 'native-source', 'inputlevel': 0,
}),
('db-user',
{'type' : 'string',
'default': 'cubicweb',
'help': 'database user',
'group': 'native-source', 'inputlevel': 0,
}),
('db-password',
{'type' : 'password',
'default': '',
'help': 'database password',
'group': 'native-source', 'inputlevel': 0,
}),
('db-encoding',
{'type' : 'string',
'default': 'utf8',
'help': 'database encoding',
'group': 'native-source', 'inputlevel': 1,
}),
)
def __init__(self, repo, appschema, source_config, *args, **kwargs):
SQLAdapterMixIn.__init__(self, source_config)
AbstractSource.__init__(self, repo, appschema, source_config,
*args, **kwargs)
# sql generator
self._rql_sqlgen = SQLGenerator(appschema, self.dbhelper,
self.encoding)
# full text index helper
self.indexer = get_indexer(self.dbdriver, self.encoding)
# advanced functionality helper
self.dbhelper.fti_uid_attr = self.indexer.uid_attr
self.dbhelper.fti_table = self.indexer.table
self.dbhelper.fti_restriction_sql = self.indexer.restriction_sql
self.dbhelper.fti_need_distinct_query = self.indexer.need_distinct
# sql queries cache
self._cache = Cache(repo.config['rql-cache-size'])
self._temp_table_data = {}
self._eid_creation_lock = Lock()
# XXX no_sqlite_wrap trick since we've a sqlite locking pb when
# running unittest_multisources with the wrapping below
if self.dbdriver == 'sqlite' and \
not getattr(repo.config, 'no_sqlite_wrap', False):
from cubicweb.server.sources.extlite import ConnectionWrapper
self.get_connection = lambda: ConnectionWrapper(self)
self.check_connection = lambda cnx: cnx
def pool_reset(cnx):
if cnx._cnx is not None:
cnx._cnx.close()
cnx._cnx = None
self.pool_reset = pool_reset
@property
def _sqlcnx(self):
# XXX: sqlite connections can only be used in the same thread, so
# create a new one each time necessary. If it appears to be time
# consuming, find another way
return SQLAdapterMixIn.get_connection(self)
def reset_caches(self):
"""method called during test to reset potential source caches"""
self._cache = Cache(self.repo.config['rql-cache-size'])
def clear_eid_cache(self, eid, etype):
"""clear potential caches for the given eid"""
self._cache.pop('%s X WHERE X eid %s' % (etype, eid), None)
self._cache.pop('Any X WHERE X eid %s' % eid, None)
def sqlexec(self, session, sql, args=None):
"""execute the query and return its result"""
cursor = session.pool[self.uri]
self.doexec(cursor, sql, args)
return self.process_result(cursor)
def init_creating(self):
pool = self.repo._get_pool()
pool.pool_set()
# check full text index availibility
if not self.indexer.has_fti_table(pool['system']):
self.error('no text index table')
self.indexer = None
pool.pool_reset()
self.repo._free_pool(pool)
def init(self):
self.init_creating()
pool = self.repo._get_pool()
pool.pool_set()
# XXX cubicweb < 2.42 compat
if 'deleted_entities' in self.dbhelper.list_tables(pool['system']):
self.has_deleted_entitites_table = True
else:
self.has_deleted_entitites_table = False
pool.pool_reset()
self.repo._free_pool(pool)
# ISource interface #######################################################
def compile_rql(self, rql):
rqlst = self.repo.querier._rqlhelper.parse(rql)
rqlst.restricted_vars = ()
rqlst.children[0].solutions = self._sols
self.repo.querier.sqlgen_annotate(rqlst)
set_qdata(self.schema.rschema, rqlst, ())
return rqlst
def set_schema(self, schema):
"""set the application'schema"""
self._cache = Cache(self.repo.config['rql-cache-size'])
self.cache_hit, self.cache_miss, self.no_cache = 0, 0, 0
self.schema = schema
try:
self._rql_sqlgen.schema = schema
except AttributeError:
pass # __init__
if 'CWUser' in schema: # probably an empty schema if not true...
# rql syntax trees used to authenticate users
self._passwd_rqlst = self.compile_rql(self.passwd_rql)
self._auth_rqlst = self.compile_rql(self.auth_rql)
def support_entity(self, etype, write=False):
"""return true if the given entity's type is handled by this adapter
if write is true, return true only if it's a RW support
"""
return not etype in NONSYSTEM_ETYPES
def support_relation(self, rtype, write=False):
"""return true if the given relation's type is handled by this adapter
if write is true, return true only if it's a RW support
"""
if write:
return not rtype in NONSYSTEM_RELATIONS
# due to current multi-sources implementation, the system source
# can't claim not supporting a relation
return True #not rtype == 'content_for'
def authenticate(self, session, login, password):
"""return CWUser eid for the given login/password if this account is
defined in this source, else raise `AuthenticationError`
two queries are needed since passwords are stored crypted, so we have
to fetch the salt first
"""
args = {'login': login, 'pwd' : password}
if password is not None:
rset = self.syntax_tree_search(session, self._passwd_rqlst, args)
try:
pwd = rset[0][0]
except IndexError:
raise AuthenticationError('bad login')
# passwords are stored using the Bytes type, so we get a StringIO
if pwd is not None:
args['pwd'] = crypt_password(password, pwd.getvalue()[:2])
# get eid from login and (crypted) password
rset = self.syntax_tree_search(session, self._auth_rqlst, args)
try:
return rset[0][0]
except IndexError:
raise AuthenticationError('bad password')
def syntax_tree_search(self, session, union, args=None, cachekey=None,
varmap=None):
"""return result from this source for a rql query (actually from
a rql syntax tree and a solution dictionary mapping each used
variable to a possible type). If cachekey is given, the query
necessary to fetch the results (but not the results themselves)
may be cached using this key.
"""
if server.DEBUG:
print 'RQL FOR NATIVE SOURCE', self.uri, cachekey
if varmap:
print 'USING VARMAP', varmap
print union.as_string()
if args: print 'ARGS', args
print 'SOLUTIONS', ','.join(str(s.solutions) for s in union.children)
# remember number of actually selected term (sql generation may append some)
if cachekey is None:
self.no_cache += 1
# generate sql query if we are able to do so (not supported types...)
sql, query_args = self._rql_sqlgen.generate(union, args, varmap)
else:
# sql may be cached
try:
sql, query_args = self._cache[cachekey]
self.cache_hit += 1
except KeyError:
self.cache_miss += 1
sql, query_args = self._rql_sqlgen.generate(union, args, varmap)
self._cache[cachekey] = sql, query_args
args = self.merge_args(args, query_args)
cursor = session.pool[self.uri]
assert isinstance(sql, basestring), repr(sql)
try:
self.doexec(cursor, sql, args)
except (self.dbapi_module.OperationalError,
self.dbapi_module.InterfaceError):
# FIXME: better detection of deconnection pb
self.info("request failed '%s' ... retry with a new cursor", sql)
session.pool.reconnect(self)
cursor = session.pool[self.uri]
self.doexec(cursor, sql, args)
res = self.process_result(cursor)
if server.DEBUG:
print '------>', res
return res
def flying_insert(self, table, session, union, args=None, varmap=None):
"""similar as .syntax_tree_search, but inserts data in the
temporary table (on-the-fly if possible, eg for the system
source whose the given cursor come from). If not possible,
inserts all data by calling .executemany().
"""
if self.uri == 'system':
if server.DEBUG:
print 'FLYING RQL FOR SOURCE', self.uri
if varmap:
print 'USING VARMAP', varmap
print union.as_string()
print 'SOLUTIONS', ','.join(str(s.solutions) for s in union.children)
# generate sql queries if we are able to do so
sql, query_args = self._rql_sqlgen.generate(union, args, varmap)
query = 'INSERT INTO %s %s' % (table, sql.encode(self.encoding))
self.doexec(session.pool[self.uri], query,
self.merge_args(args, query_args))
else:
super(NativeSQLSource, self).flying_insert(table, session, union,
args, varmap)
def _manual_insert(self, results, table, session):
"""insert given result into a temporary table on the system source"""
if not results:
return
query_args = ['%%(%s)s' % i for i in xrange(len(results[0]))]
query = 'INSERT INTO %s VALUES(%s)' % (table, ','.join(query_args))
kwargs_list = []
for row in results:
kwargs = {}
row = tuple(row)
for index, cell in enumerate(row):
if isinstance(cell, Binary):
cell = self.binary(cell.getvalue())
kwargs[str(index)] = cell
kwargs_list.append(kwargs)
self.doexecmany(session.pool[self.uri], query, kwargs_list)
def clean_temp_data(self, session, temptables):
"""remove temporary data, usually associated to temporary tables"""
if temptables:
cursor = session.pool[self.uri]
for table in temptables:
try:
self.doexec(cursor,'DROP TABLE %s' % table)
except:
pass
try:
del self._temp_table_data[table]
except KeyError:
continue
def add_entity(self, session, entity):
"""add a new entity to the source"""
attrs = self.preprocess_entity(entity)
sql = self.sqlgen.insert(SQL_PREFIX + str(entity.e_schema), attrs)
self.doexec(session.pool[self.uri], sql, attrs)
def update_entity(self, session, entity):
"""replace an entity in the source"""
attrs = self.preprocess_entity(entity)
sql = self.sqlgen.update(SQL_PREFIX + str(entity.e_schema), attrs, [SQL_PREFIX + 'eid'])
self.doexec(session.pool[self.uri], sql, attrs)
def delete_entity(self, session, etype, eid):
"""delete an entity from the source"""
attrs = {SQL_PREFIX + 'eid': eid}
sql = self.sqlgen.delete(SQL_PREFIX + etype, attrs)
self.doexec(session.pool[self.uri], sql, attrs)
def add_relation(self, session, subject, rtype, object):
"""add a relation to the source"""
attrs = {'eid_from': subject, 'eid_to': object}
sql = self.sqlgen.insert('%s_relation' % rtype, attrs)
self.doexec(session.pool[self.uri], sql, attrs)
def delete_relation(self, session, subject, rtype, object):
"""delete a relation from the source"""
rschema = self.schema.rschema(rtype)
if rschema.inlined:
table = SQL_PREFIX + session.describe(subject)[0]
column = SQL_PREFIX + rtype
sql = 'UPDATE %s SET %s=NULL WHERE %seid=%%(eid)s' % (table, column,
SQL_PREFIX)
attrs = {'eid' : subject}
else:
attrs = {'eid_from': subject, 'eid_to': object}
sql = self.sqlgen.delete('%s_relation' % rtype, attrs)
self.doexec(session.pool[self.uri], sql, attrs)
def doexec(self, cursor, query, args=None):
"""Execute a query.
it's a function just so that it shows up in profiling
"""
#t1 = time()
if server.DEBUG:
print 'exec', query, args
#import sys
#sys.stdout.flush()
# str(query) to avoid error if it's an unicode string
try:
cursor.execute(str(query), args)
except Exception, ex:
self.critical("sql: %r\n args: %s\ndbms message: %r",
query, args, ex.args[0])
raise
def doexecmany(self, cursor, query, args):
"""Execute a query.
it's a function just so that it shows up in profiling
"""
#t1 = time()
if server.DEBUG:
print 'execmany', query, 'with', len(args), 'arguments'
#import sys
#sys.stdout.flush()
# str(query) to avoid error if it's an unicode string
try:
cursor.executemany(str(query), args)
except:
self.critical("sql many: %r\n args: %s", query, args)
raise
# short cut to method requiring advanced db helper usage ##################
def create_index(self, session, table, column, unique=False):
cursor = LogCursor(session.pool[self.uri])
self.dbhelper.create_index(cursor, table, column, unique)
def drop_index(self, session, table, column, unique=False):
cursor = LogCursor(session.pool[self.uri])
self.dbhelper.drop_index(cursor, table, column, unique)
# system source interface #################################################
def eid_type_source(self, session, eid):
"""return a tuple (type, source, extid) for the entity with id <eid>"""
sql = 'SELECT type, source, extid FROM entities WHERE eid=%s' % eid
try:
res = session.system_sql(sql).fetchone()
except:
assert session.pool, 'session has no pool set'
raise UnknownEid(eid)
if res is None:
raise UnknownEid(eid)
if res[-1] is not None:
if not isinstance(res, list):
res = list(res)
res[-1] = b64decode(res[-1])
return res
def extid2eid(self, session, source, extid):
"""get eid from an external id. Return None if no record found."""
assert isinstance(extid, str)
cursor = session.system_sql('SELECT eid FROM entities WHERE '
'extid=%(x)s AND source=%(s)s',
{'x': b64encode(extid), 's': source.uri})
# XXX testing rowcount cause strange bug with sqlite, results are there
# but rowcount is 0
#if cursor.rowcount > 0:
try:
result = cursor.fetchone()
if result:
return result[0]
except:
pass
return None
def temp_table_def(self, selected, sol, table):
return make_schema(selected, sol, table, self.dbhelper.TYPE_MAPPING)
def create_temp_table(self, session, table, schema):
# we don't want on commit drop, this may cause problem when
# running with an ldap source, and table will be deleted manually any way
# on commit
sql = self.dbhelper.sql_temporary_table(table, schema, False)
self.doexec(session.pool[self.uri], sql)
def create_eid(self, session):
self._eid_creation_lock.acquire()
try:
cursor = session.pool[self.uri]
for sql in self.dbhelper.sqls_increment_sequence('entities_id_seq'):
self.doexec(cursor, sql)
return cursor.fetchone()[0]
finally:
self._eid_creation_lock.release()
def add_info(self, session, entity, source, extid=None):
"""add type and source info for an eid into the system table"""
# begin by inserting eid/type/source/extid into the entities table
if extid is not None:
assert isinstance(extid, str)
extid = b64encode(extid)
attrs = {'type': entity.id, 'eid': entity.eid, 'extid': extid,
'source': source.uri, 'mtime': datetime.now()}
session.system_sql(self.sqlgen.insert('entities', attrs), attrs)
def delete_info(self, session, eid, etype, uri, extid):
"""delete system information on deletion of an entity by transfering
record from the entities table to the deleted_entities table
"""
attrs = {'eid': eid}
session.system_sql(self.sqlgen.delete('entities', attrs), attrs)
if self.has_deleted_entitites_table:
if extid is not None:
assert isinstance(extid, str), type(extid)
extid = b64encode(extid)
attrs = {'type': etype, 'eid': eid, 'extid': extid,
'source': uri, 'dtime': datetime.now()}
session.system_sql(self.sqlgen.insert('deleted_entities', attrs), attrs)
def fti_unindex_entity(self, session, eid):
"""remove text content for entity with the given eid from the full text
index
"""
try:
self.indexer.cursor_unindex_object(eid, session.pool['system'])
except:
if self.indexer is not None:
self.exception('error while unindexing %s', eid)
def fti_index_entity(self, session, entity):
"""add text content of a created/modified entity to the full text index
"""
self.info('reindexing %r', entity.eid)
try:
self.indexer.cursor_reindex_object(entity.eid, entity,
session.pool['system'])
except:
if self.indexer is not None:
self.exception('error while reindexing %s', entity)
# update entities.mtime
attrs = {'eid': entity.eid, 'mtime': datetime.now()}
session.system_sql(self.sqlgen.update('entities', attrs, ['eid']), attrs)
def modified_entities(self, session, etypes, mtime):
"""return a 2-uple:
* list of (etype, eid) of entities of the given types which have been
modified since the given timestamp (actually entities whose full text
index content has changed)
* list of (etype, eid) of entities of the given types which have been
deleted since the given timestamp
"""
modsql = _modified_sql('entities', etypes)
cursor = session.system_sql(modsql, {'time': mtime})
modentities = cursor.fetchall()
delsql = _modified_sql('deleted_entities', etypes)
cursor = session.system_sql(delsql, {'time': mtime})
delentities = cursor.fetchall()
return modentities, delentities
def sql_schema(driver):
helper = get_adv_func_helper(driver)
schema = """
/* Create the repository's system database */
%s
CREATE TABLE entities (
eid INTEGER PRIMARY KEY NOT NULL,
type VARCHAR(64) NOT NULL,
source VARCHAR(64) NOT NULL,
mtime TIMESTAMP NOT NULL,
extid VARCHAR(256)
);
CREATE INDEX entities_type_idx ON entities(type);
CREATE INDEX entities_mtime_idx ON entities(mtime);
CREATE INDEX entities_extid_idx ON entities(extid);
CREATE TABLE deleted_entities (
eid INTEGER PRIMARY KEY NOT NULL,
type VARCHAR(64) NOT NULL,
source VARCHAR(64) NOT NULL,
dtime TIMESTAMP NOT NULL,
extid VARCHAR(256)
);
CREATE INDEX deleted_entities_type_idx ON deleted_entities(type);
CREATE INDEX deleted_entities_dtime_idx ON deleted_entities(dtime);
CREATE INDEX deleted_entities_extid_idx ON deleted_entities(extid);
""" % helper.sql_create_sequence('entities_id_seq')
return schema
def sql_drop_schema(driver):
helper = get_adv_func_helper(driver)
return """
%s
DROP TABLE entities;
DROP TABLE deleted_entities;
""" % helper.sql_drop_sequence('entities_id_seq')
def grant_schema(user, set_owner=True):
result = ''
if set_owner:
result = 'ALTER TABLE entities OWNER TO %s;\n' % user
result += 'ALTER TABLE deleted_entities OWNER TO %s;\n' % user
result += 'ALTER TABLE entities_id_seq OWNER TO %s;\n' % user
result += 'GRANT ALL ON entities TO %s;\n' % user
result += 'GRANT ALL ON deleted_entities TO %s;\n' % user
result += 'GRANT ALL ON entities_id_seq TO %s;\n' % user
return result