[multi-sources-removal] Drop deleted_entities system table and entities.mtime column since they were only used by the entities_modified_since api of the repository which has been dropped. Along with them, the multi-sources-etypes configuration variable and some sql queries at modification/deletion time of entities. Bon vent ! Related to #2919300

option_group_changed('port', 'main', 'web')
option_group_changed('query-log-file', 'main', 'web')
option_group_changed('profile', 'main', 'web')
option_group_changed('max-post-length', 'main', 'web')