server/checkintegrity.py
author Julien Jehannet <Julien Jehannet <julien.jehannet@logilab.fr>>
Tue, 02 Mar 2010 21:48:36 +0100
branchstable
changeset 4783 6dc34d4cf892
parent 4691 ae468fae9965
child 4806 4f12f59b1a13
permissions -rw-r--r--
[F] views: fix 2 unicode errors 1. You can now use valid unicode strings in ValidationError exception. Previously, if 'err' contains unicode, UnicodeDecodeError was raised by format_errors() >>> templstr = '<li>%s</li>\n' >>> e = ValidationError(None, {None: u'oué, une exception en unicode!'}) >>> templstr % e '<li>None (None): ou\xc3\xa9, une exception en unicode!</li>\n' >>> templstr = u'<li>%s</li>\n' >>> templstr % e u'<li>None (None): ou\xe9, une exception en unicode!</li>\n' 2. The message of an Exception can contains unicode. But it now properly managed by “informal” string representation. We can easily fix the problem by using the Exception.message attribute that still contains the original message. >>> a = AssertionError(u'séfdsdf') >>> a.message u's\xe9fdsdf' >>> str(a) Traceback (most recent call last): File "<stdin>", line 1, in <module> UnicodeEncodeError: 'ascii' codec can't encode character u'\xe9' in position 1: ordinal not in range(128) >>> a = ValueError(u'fsdfsdéfsdfs') >>> str(a) Traceback (most recent call last): File "<stdin>", line 1, in <module> UnicodeEncodeError: 'ascii' codec can't encode character u'\xe9' in position 6: ordinal not in range(128) >>> a ValueError(u'fsdfsd\xe9fsdfs',) >>> unicode(a) Traceback (most recent call last): File "<stdin>", line 1, in <module> UnicodeEncodeError: 'ascii' codec can't encode character u'\xe9' in position 6: ordinal not in range(128) >>> a.message u'fsdfsd\xe9fsdfs'

"""Check integrity of a CubicWeb repository. Hum actually only the system database
is checked.

:organization: Logilab
:copyright: 2001-2010 LOGILAB S.A. (Paris, FRANCE), license is LGPL v2.
:contact: http://www.logilab.fr/ -- mailto:contact@logilab.fr
:license: GNU Lesser General Public License, v2.1 - http://www.gnu.org/licenses
"""
__docformat__ = "restructuredtext en"

import sys
from datetime import datetime

from logilab.common.shellutils import ProgressBar

from cubicweb.schema import PURE_VIRTUAL_RTYPES
from cubicweb.server.sqlutils import SQL_PREFIX

def has_eid(sqlcursor, eid, eids):
    """return true if the eid is a valid eid"""
    if eids.has_key(eid):
        return eids[eid]
    sqlcursor.execute('SELECT type, source FROM entities WHERE eid=%s' % eid)
    try:
        etype, source = sqlcursor.fetchone()
    except:
        eids[eid] = False
        return False
    if source and source != 'system':
        # XXX what to do...
        eids[eid] = True
        return True
    sqlcursor.execute('SELECT * FROM %s%s WHERE %seid=%s' % (SQL_PREFIX, etype,
                                                             SQL_PREFIX, eid))
    result = sqlcursor.fetchall()
    if len(result) == 0:
        eids[eid] = False
        return False
    elif len(result) > 1:
        msg = '  More than one entity with eid %s exists in source !'
        print >> sys.stderr, msg % eid
        print >> sys.stderr, '  WARNING : Unable to fix this, do it yourself !'
    eids[eid] = True
    return True

# XXX move to yams?
def etype_fti_containers(eschema, _done=None):
    if _done is None:
        _done = set()
    _done.add(eschema)
    containers = tuple(eschema.fulltext_containers())
    if containers:
        for rschema, target in containers:
            if target == 'object':
                targets = rschema.objects(eschema)
            else:
                targets = rschema.subjects(eschema)
            for targeteschema in targets:
                if targeteschema in _done:
                    continue
                _done.add(targeteschema)
                for container in etype_fti_containers(targeteschema, _done):
                    yield container
    else:
        yield eschema

def reindex_entities(schema, session, withpb=True):
    """reindex all entities in the repository"""
    # deactivate modification_date hook since we don't want them
    # to be updated due to the reindexation
    from cubicweb.server.repository import FTIndexEntityOp
    repo = session.repo
    cursor = session.pool['system']
    if not repo.system_source.indexer.has_fti_table(cursor):
        from indexer import get_indexer
        print 'no text index table'
        indexer = get_indexer(repo.system_source.dbdriver)
        # XXX indexer.init_fti(cursor) once index 0.7 is out
        indexer.init_extensions(cursor)
        cursor.execute(indexer.sql_init_fti())
    repo.config.disabled_hooks_categories.add('metadata')
    repo.config.disabled_hooks_categories.add('integrity')
    repo.do_fti = True  # ensure full-text indexation is activated
    etypes = set()
    for eschema in schema.entities():
        if eschema.final:
            continue
        indexable_attrs = tuple(eschema.indexable_attributes()) # generator
        if not indexable_attrs:
            continue
        for container in etype_fti_containers(eschema):
            etypes.add(container)
    print 'Reindexing entities of type %s' % \
          ', '.join(sorted(str(e) for e in etypes))
    if withpb:
        pb = ProgressBar(len(etypes) + 1)
    # first monkey patch Entity.check to disable validation
    from cubicweb.entity import Entity
    _check = Entity.check
    Entity.check = lambda self, creation=False: True
    # clear fti table first
    session.system_sql('DELETE FROM %s' % session.repo.system_source.dbhelper.fti_table)
    if withpb:
        pb.update()
    # reindex entities by generating rql queries which set all indexable
    # attribute to their current value
    for eschema in etypes:
        for entity in session.execute('Any X WHERE X is %s' % eschema).entities():
            FTIndexEntityOp(session, entity=entity)
        if withpb:
            pb.update()
    # restore Entity.check
    Entity.check = _check
    repo.config.disabled_hooks_categories.remove('metadata')
    repo.config.disabled_hooks_categories.remove('integrity')


def check_schema(schema, session, eids, fix=1):
    """check serialized schema"""
    print 'Checking serialized schema'
    unique_constraints = ('SizeConstraint', 'FormatConstraint',
                          'VocabularyConstraint', 'RQLConstraint',
                          'RQLVocabularyConstraint')
    rql = ('Any COUNT(X),RN,EN,ECTN GROUPBY RN,EN,ECTN ORDERBY 1 '
           'WHERE X is CWConstraint, R constrained_by X, '
           'R relation_type RT, R from_entity ET, RT name RN, '
           'ET name EN, X cstrtype ECT, ECT name ECTN')
    for count, rn, en, cstrname in session.execute(rql):
        if count == 1:
            continue
        if cstrname in unique_constraints:
            print "ERROR: got %s %r constraints on relation %s.%s" % (
                count, cstrname, en, rn)



def check_text_index(schema, session, eids, fix=1):
    """check all entities registered in the text index"""
    print 'Checking text index'
    cursor = session.system_sql('SELECT uid FROM appears;')
    for row in cursor.fetchall():
        eid = row[0]
        if not has_eid(cursor, eid, eids):
            msg = '  Entity with eid %s exists in the text index but in no source'
            print >> sys.stderr, msg % eid,
            if fix:
                session.system_sql('DELETE FROM appears WHERE uid=%s;' % eid)
                print >> sys.stderr, ' [FIXED]'
            else:
                print >> sys.stderr


def check_entities(schema, session, eids, fix=1):
    """check all entities registered in the repo system table"""
    print 'Checking entities system table'
    cursor = session.system_sql('SELECT eid FROM entities;')
    for row in cursor.fetchall():
        eid = row[0]
        if not has_eid(cursor, eid, eids):
            msg = '  Entity with eid %s exists in the system table but in no source'
            print >> sys.stderr, msg % eid,
            if fix:
                session.system_sql('DELETE FROM entities WHERE eid=%s;' % eid)
                print >> sys.stderr, ' [FIXED]'
            else:
                print >> sys.stderr
    print 'Checking entities tables'
    for eschema in schema.entities():
        if eschema.final:
            continue
        table = SQL_PREFIX + eschema.type
        column = SQL_PREFIX +  'eid'
        cursor = session.system_sql('SELECT %s FROM %s;' % (column, table))
        for row in cursor.fetchall():
            eid = row[0]
            # eids is full since we have fetched everyting from the entities table,
            # no need to call has_eid
            if not eid in eids or not eids[eid]:
                msg = '  Entity with eid %s exists in the %s table but not in the system table'
                print >> sys.stderr, msg % (eid, eschema.type),
                if fix:
                    session.system_sql('DELETE FROM %s WHERE %s=%s;' % (table, column, eid))
                    print >> sys.stderr, ' [FIXED]'
                else:
                    print >> sys.stderr


def bad_related_msg(rtype, target, eid, fix):
    msg = '  A relation %s with %s eid %s exists but no such entity in sources'
    print >> sys.stderr, msg % (rtype, target, eid),
    if fix:
        print >> sys.stderr, ' [FIXED]'
    else:
        print >> sys.stderr


def check_relations(schema, session, eids, fix=1):
    """check all relations registered in the repo system table"""
    print 'Checking relations'
    for rschema in schema.relations():
        if rschema.final or rschema in PURE_VIRTUAL_RTYPES:
            continue
        if rschema.inlined:
            for subjtype in rschema.subjects():
                table = SQL_PREFIX + str(subjtype)
                column = SQL_PREFIX +  str(rschema)
                sql = 'SELECT %s FROM %s WHERE %s IS NOT NULL;' % (
                    column, table, column)
                cursor = session.system_sql(sql)
                for row in cursor.fetchall():
                    eid = row[0]
                    if not has_eid(cursor, eid, eids):
                        bad_related_msg(rschema, 'object', eid, fix)
                        if fix:
                            sql = 'UPDATE %s SET %s=NULL WHERE %s=%s;' % (
                                table, column, column, eid)
                            session.system_sql(sql)
            continue
        cursor = session.system_sql('SELECT eid_from FROM %s_relation;' % rschema)
        for row in cursor.fetchall():
            eid = row[0]
            if not has_eid(cursor, eid, eids):
                bad_related_msg(rschema, 'subject', eid, fix)
                if fix:
                    sql = 'DELETE FROM %s_relation WHERE eid_from=%s;' % (
                        rschema, eid)
                    session.system_sql(sql)
        cursor = session.system_sql('SELECT eid_to FROM %s_relation;' % rschema)
        for row in cursor.fetchall():
            eid = row[0]
            if not has_eid(cursor, eid, eids):
                bad_related_msg(rschema, 'object', eid, fix)
                if fix:
                    sql = 'DELETE FROM %s_relation WHERE eid_to=%s;' % (
                        rschema, eid)
                    session.system_sql(sql)


def check_metadata(schema, session, eids, fix=1):
    """check entities has required metadata

    FIXME: rewrite using RQL queries ?
    """
    print 'Checking metadata'
    cursor = session.system_sql("SELECT DISTINCT type FROM entities;")
    eidcolumn = SQL_PREFIX + 'eid'
    for etype, in cursor.fetchall():
        table = SQL_PREFIX + etype
        for rel, default in ( ('creation_date', datetime.now()),
                              ('modification_date', datetime.now()), ):
            column = SQL_PREFIX + rel
            cursor = session.system_sql("SELECT %s FROM %s WHERE %s is NULL"
                                        % (eidcolumn, table, column))
            for eid, in cursor.fetchall():
                msg = '  %s with eid %s has no %s'
                print >> sys.stderr, msg % (etype, eid, rel),
                if fix:
                    session.system_sql("UPDATE %s SET %s=%%(v)s WHERE %s=%s ;"
                                       % (table, column, eidcolumn, eid),
                                       {'v': default})
                    print >> sys.stderr, ' [FIXED]'
                else:
                    print >> sys.stderr
    cursor = session.system_sql('SELECT MIN(%s) FROM %sCWUser;' % (eidcolumn,
                                                                  SQL_PREFIX))
    default_user_eid = cursor.fetchone()[0]
    assert default_user_eid is not None, 'no user defined !'
    for rel, default in ( ('owned_by', default_user_eid), ):
        cursor = session.system_sql("SELECT eid, type FROM entities "
                                    "WHERE NOT EXISTS "
                                    "(SELECT 1 FROM %s_relation WHERE eid_from=eid);"
                                    % rel)
        for eid, etype in cursor.fetchall():
            msg = '  %s with eid %s has no %s relation'
            print >> sys.stderr, msg % (etype, eid, rel),
            if fix:
                session.system_sql('INSERT INTO %s_relation VALUES (%s, %s) ;'
                                   % (rel, eid, default))
                print >> sys.stderr, ' [FIXED]'
            else:
                print >> sys.stderr


def check(repo, cnx, checks, reindex, fix, withpb=True):
    """check integrity of instance's repository,
    using given user and password to locally connect to the repository
    (no running cubicweb server needed)
    """
    session = repo._get_session(cnx.sessionid, setpool=True)
    # yo, launch checks
    if checks:
        eids_cache = {}
        for check in checks:
            check_func = globals()['check_%s' % check]
            check_func(repo.schema, session, eids_cache, fix=fix)
        if fix:
            cnx.commit()
        else:
            print
        if not fix:
            print 'WARNING: Diagnostic run, nothing has been corrected'
    if reindex:
        cnx.rollback()
        session.set_pool()
        reindex_entities(repo.schema, session, withpb=withpb)
        cnx.commit()