[doc] fix errors in test_visibility_propagation example * forget to use the access instructions * wrong use of the function entity_from_eid * some indentation problems

etc/init.d
etc/cubicweb.d
etc/bash_completion.d
usr/bin
usr/share/doc/cubicweb-ctl
var/log/cubicweb
var/lib/cubicweb/backup
var/lib/cubicweb/instances