[book] fixes some references and other doc construction pbs * predefine order of js files in index generation, skip some files * fix some references to the base tutorial (recently changed) * other ReST fixes

\.svn
^build$
^dist$
\.pyc$
\.pyo$
\.bak$
\.old$
\~$
\#.*?\#$
\.swp$
^doc/book/en/apidoc$