# copyright 2003-2013 LOGILAB S.A. (Paris, FRANCE), all rights reserved.
# contact http://www.logilab.fr/ -- mailto:contact@logilab.fr
#
# This file is part of CubicWeb.
#
# CubicWeb is free software: you can redistribute it and/or modify it under the
# terms of the GNU Lesser General Public License as published by the Free
# Software Foundation, either version 2.1 of the License, or (at your option)
# any later version.
#
# CubicWeb is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
# details.
#
# You should have received a copy of the GNU Lesser General Public License along
# with CubicWeb. If not, see <http://www.gnu.org/licenses/>.
"""Adapters for native cubicweb sources.
Notes:
* extid (aka external id, the primary key of an entity in the external source
from which it comes from) are stored in a varchar column encoded as a base64
string. This is because it should actually be Bytes but we want an index on
it for fast querying.
"""
__docformat__ = "restructuredtext en"
try:
from cPickle import loads, dumps
import cPickle as pickle
except ImportError:
from pickle import loads, dumps
import pickle
from threading import Lock
from datetime import datetime
from base64 import b64decode, b64encode
from contextlib import contextmanager
from os.path import abspath, basename
import re
import itertools
import zipfile
import logging
import sys
from logilab.common.compat import any
from logilab.common.decorators import cached, clear_cache
from logilab.common.configuration import Method
from logilab.common.shellutils import getlogin
from logilab.database import get_db_helper, sqlgen
from yams import schema2sql as y2sql
from yams.schema import role_name
from cubicweb import (UnknownEid, AuthenticationError, ValidationError, Binary,
UniqueTogetherError, QueryError, UndoTransactionException)
from cubicweb import transaction as tx, server, neg_role
from cubicweb.utils import QueryCache
from cubicweb.schema import VIRTUAL_RTYPES
from cubicweb.cwconfig import CubicWebNoAppConfiguration
from cubicweb.server import hook
from cubicweb.server.utils import crypt_password, eschema_eid, verify_and_update
from cubicweb.server.sqlutils import SQL_PREFIX, SQLAdapterMixIn
from cubicweb.server.rqlannotation import set_qdata
from cubicweb.server.hook import CleanupDeletedEidsCacheOp
from cubicweb.server.edition import EditedEntity
from cubicweb.server.sources import AbstractSource, dbg_st_search, dbg_results
from cubicweb.server.sources.rql2sql import SQLGenerator
ATTR_MAP = {}
NONSYSTEM_ETYPES = set()
NONSYSTEM_RELATIONS = set()
class LogCursor(object):
def __init__(self, cursor):
self.cu = cursor
def execute(self, query, args=None):
"""Execute a query.
it's a function just so that it shows up in profiling
"""
if server.DEBUG & server.DBG_SQL:
print 'exec', query, args
try:
self.cu.execute(str(query), args)
except Exception as ex:
print "sql: %r\n args: %s\ndbms message: %r" % (
query, args, ex.args[0])
raise
def fetchall(self):
return self.cu.fetchall()
def fetchone(self):
return self.cu.fetchone()
def make_schema(selected, solution, table, typemap):
"""return a sql schema to store RQL query result"""
sql = []
varmap = {}
for i, term in enumerate(selected):
name = 'C%s' % i
key = term.as_string()
varmap[key] = '%s.%s' % (table, name)
ttype = term.get_type(solution)
try:
sql.append('%s %s' % (name, typemap[ttype]))
except KeyError:
# assert not schema(ttype).final
sql.append('%s %s' % (name, typemap['Int']))
return ','.join(sql), varmap
def _modified_sql(table, etypes):
# XXX protect against sql injection
if len(etypes) > 1:
restr = 'type IN (%s)' % ','.join("'%s'" % etype for etype in etypes)
else:
restr = "type='%s'" % etypes[0]
if table == 'entities':
attr = 'mtime'
else:
attr = 'dtime'
return 'SELECT type, eid FROM %s WHERE %s AND %s > %%(time)s' % (
table, restr, attr)
def sql_or_clauses(sql, clauses):
select, restr = sql.split(' WHERE ', 1)
restrclauses = restr.split(' AND ')
for clause in clauses:
restrclauses.remove(clause)
if restrclauses:
restr = '%s AND (%s)' % (' AND '.join(restrclauses),
' OR '.join(clauses))
else:
restr = '(%s)' % ' OR '.join(clauses)
return '%s WHERE %s' % (select, restr)
def rdef_table_column(rdef):
"""return table and column used to store the given relation definition in
the database
"""
return (SQL_PREFIX + str(rdef.subject),
SQL_PREFIX + str(rdef.rtype))
def rdef_physical_info(dbhelper, rdef):
"""return backend type and a boolean flag if NULL values should be allowed
for a given relation definition
"""
if rdef.object.final:
ttype = rdef.object
else:
ttype = 'Int' # eid type
coltype = y2sql.type_from_constraints(dbhelper, ttype,
rdef.constraints, creating=False)
allownull = rdef.cardinality[0] != '1'
return coltype, allownull
class _UndoException(Exception):
"""something went wrong during undoing"""
def __unicode__(self):
"""Called by the unicode builtin; should return a Unicode object
Type of _UndoException message must be `unicode` by design in CubicWeb.
"""
assert isinstance(self.args[0], unicode)
return self.args[0]
def _undo_check_relation_target(tentity, rdef, role):
"""check linked entity has not been redirected for this relation"""
card = rdef.role_cardinality(role)
if card in '?1' and tentity.related(rdef.rtype, role):
raise _UndoException(tentity._cw._(
"Can't restore %(role)s relation %(rtype)s to entity %(eid)s which "
"is already linked using this relation.")
% {'role': neg_role(role),
'rtype': rdef.rtype,
'eid': tentity.eid})
def _undo_rel_info(session, subj, rtype, obj):
entities = []
for role, eid in (('subject', subj), ('object', obj)):
try:
entities.append(session.entity_from_eid(eid))
except UnknownEid:
raise _UndoException(session._(
"Can't restore relation %(rtype)s, %(role)s entity %(eid)s"
" doesn't exist anymore.")
% {'role': session._(role),
'rtype': session._(rtype),
'eid': eid})
sentity, oentity = entities
try:
rschema = session.vreg.schema.rschema(rtype)
rdef = rschema.rdefs[(sentity.cw_etype, oentity.cw_etype)]
except KeyError:
raise _UndoException(session._(
"Can't restore relation %(rtype)s between %(subj)s and "
"%(obj)s, that relation does not exists anymore in the "
"schema.")
% {'rtype': session._(rtype),
'subj': subj,
'obj': obj})
return sentity, oentity, rdef
def _undo_has_later_transaction(session, eid):
return session.system_sql('''\
SELECT T.tx_uuid FROM transactions AS TREF, transactions AS T
WHERE TREF.tx_uuid='%(txuuid)s' AND T.tx_uuid!='%(txuuid)s'
AND T.tx_time>=TREF.tx_time
AND (EXISTS(SELECT 1 FROM tx_entity_actions AS TEA
WHERE TEA.tx_uuid=T.tx_uuid AND TEA.eid=%(eid)s)
OR EXISTS(SELECT 1 FROM tx_relation_actions as TRA
WHERE TRA.tx_uuid=T.tx_uuid AND (
TRA.eid_from=%(eid)s OR TRA.eid_to=%(eid)s))
)''' % {'txuuid': session.transaction_data['undoing_uuid'],
'eid': eid}).fetchone()
class NativeSQLSource(SQLAdapterMixIn, AbstractSource):
"""adapter for source using the native cubicweb schema (see below)
"""
sqlgen_class = SQLGenerator
options = (
('db-driver',
{'type' : 'string',
'default': 'postgres',
# XXX use choice type
'help': 'database driver (postgres, mysql, sqlite, sqlserver2005)',
'group': 'native-source', 'level': 0,
}),
('db-host',
{'type' : 'string',
'default': '',
'help': 'database host',
'group': 'native-source', 'level': 1,
}),
('db-port',
{'type' : 'string',
'default': '',
'help': 'database port',
'group': 'native-source', 'level': 1,
}),
('db-name',
{'type' : 'string',
'default': Method('default_instance_id'),
'help': 'database name',
'group': 'native-source', 'level': 0,
}),
('db-user',
{'type' : 'string',
'default': CubicWebNoAppConfiguration.mode == 'user' and getlogin() or 'cubicweb',
'help': 'database user',
'group': 'native-source', 'level': 0,
}),
('db-password',
{'type' : 'password',
'default': '',
'help': 'database password',
'group': 'native-source', 'level': 0,
}),
('db-encoding',
{'type' : 'string',
'default': 'utf8',
'help': 'database encoding',
'group': 'native-source', 'level': 1,
}),
('db-extra-arguments',
{'type' : 'string',
'default': '',
'help': 'set to "Trusted_Connection" if you are using SQLServer and '
'want trusted authentication for the database connection',
'group': 'native-source', 'level': 2,
}),
)
def __init__(self, repo, source_config, *args, **kwargs):
SQLAdapterMixIn.__init__(self, source_config)
self.authentifiers = [LoginPasswordAuthentifier(self)]
if repo.config['allow-email-login']:
self.authentifiers.insert(0, EmailPasswordAuthentifier(self))
AbstractSource.__init__(self, repo, source_config, *args, **kwargs)
# sql generator
self._rql_sqlgen = self.sqlgen_class(self.schema, self.dbhelper,
ATTR_MAP.copy())
# full text index helper
self.do_fti = not repo.config['delay-full-text-indexation']
# sql queries cache
self._cache = QueryCache(repo.config['rql-cache-size'])
self._temp_table_data = {}
# we need a lock to protect eid attribution function (XXX, really?
# explain)
self._eid_cnx_lock = Lock()
self._eid_creation_cnx = None
# (etype, attr) / storage mapping
self._storages = {}
# entity types that may be used by other multi-sources instances
self.multisources_etypes = set(repo.config['multi-sources-etypes'])
# XXX no_sqlite_wrap trick since we've a sqlite locking pb when
# running unittest_multisources with the wrapping below
if self.dbdriver == 'sqlite' and \
not getattr(repo.config, 'no_sqlite_wrap', False):
from cubicweb.server.sources.extlite import ConnectionWrapper
self.dbhelper.dbname = abspath(self.dbhelper.dbname)
self.get_connection = lambda: ConnectionWrapper(self)
self.check_connection = lambda cnx: cnx
def cnxset_freed(cnx):
cnx.close()
self.cnxset_freed = cnxset_freed
if self.dbdriver == 'sqlite':
self._create_eid = None
self.create_eid = self._create_eid_sqlite
self.binary_to_str = self.dbhelper.dbapi_module.binary_to_str
@property
def _sqlcnx(self):
# XXX: sqlite connections can only be used in the same thread, so
# create a new one each time necessary. If it appears to be time
# consuming, find another way
return SQLAdapterMixIn.get_connection(self)
def check_config(self, source_entity):
"""check configuration of source entity"""
if source_entity.host_config:
msg = source_entity._cw._('the system source has its configuration '
'stored on the file-system')
raise ValidationError(source_entity.eid, {role_name('config', 'subject'): msg})
def add_authentifier(self, authentifier):
self.authentifiers.append(authentifier)
authentifier.source = self
authentifier.set_schema(self.schema)
def reset_caches(self):
"""method called during test to reset potential source caches"""
self._cache = QueryCache(self.repo.config['rql-cache-size'])
def clear_eid_cache(self, eid, etype):
"""clear potential caches for the given eid"""
self._cache.pop('Any X WHERE X eid %s, X is %s' % (eid, etype), None)
self._cache.pop('Any X WHERE X eid %s' % eid, None)
self._cache.pop('Any %s' % eid, None)
def sqlexec(self, session, sql, args=None):
"""execute the query and return its result"""
return self.process_result(self.doexec(session, sql, args))
def init_creating(self, cnxset=None):
# check full text index availibility
if self.do_fti:
if cnxset is None:
_cnxset = self.repo._get_cnxset()
_cnxset.cnxset_set()
else:
_cnxset = cnxset
if not self.dbhelper.has_fti_table(_cnxset['system']):
if not self.repo.config.creating:
self.critical('no text index table')
self.do_fti = False
if cnxset is None:
_cnxset.cnxset_freed()
self.repo._free_cnxset(_cnxset)
def backup(self, backupfile, confirm, format='native'):
"""method called to create a backup of the source's data"""
if format == 'portable':
# ensure the schema is the one stored in the database: if repository
# started in quick_start mode, the file system's one has been loaded
# so force reload
if self.repo.config.quick_start:
self.repo.set_schema(self.repo.deserialize_schema(),
resetvreg=False)
helper = DatabaseIndependentBackupRestore(self)
self.close_source_connections()
try:
helper.backup(backupfile)
finally:
self.open_source_connections()
elif format == 'native':
self.close_source_connections()
try:
self.backup_to_file(backupfile, confirm)
finally:
self.open_source_connections()
else:
raise ValueError('Unknown format %r' % format)
def restore(self, backupfile, confirm, drop, format='native'):
"""method called to restore a backup of source's data"""
if self.repo.config.init_cnxset_pool:
self.close_source_connections()
try:
if format == 'portable':
helper = DatabaseIndependentBackupRestore(self)
helper.restore(backupfile)
elif format == 'native':
self.restore_from_file(backupfile, confirm, drop=drop)
else:
raise ValueError('Unknown format %r' % format)
finally:
if self.repo.config.init_cnxset_pool:
self.open_source_connections()
def init(self, activated, source_entity):
try:
# test if 'asource' column exists
query = self.dbhelper.sql_add_limit_offset('SELECT asource FROM entities', 1)
source_entity._cw.system_sql(query)
except Exception as ex:
self.eid_type_source = self.eid_type_source_pre_131
super(NativeSQLSource, self).init(activated, source_entity)
self.init_creating(source_entity._cw.cnxset)
def shutdown(self):
if self._eid_creation_cnx:
self._eid_creation_cnx.close()
self._eid_creation_cnx = None
# XXX deprecates [un]map_attribute?
def map_attribute(self, etype, attr, cb, sourcedb=True):
self._rql_sqlgen.attr_map['%s.%s' % (etype, attr)] = (cb, sourcedb)
def unmap_attribute(self, etype, attr):
self._rql_sqlgen.attr_map.pop('%s.%s' % (etype, attr), None)
def set_storage(self, etype, attr, storage):
storage_dict = self._storages.setdefault(etype, {})
storage_dict[attr] = storage
self.map_attribute(etype, attr,
storage.callback, storage.is_source_callback)
def unset_storage(self, etype, attr):
self._storages[etype].pop(attr)
# if etype has no storage left, remove the entry
if not self._storages[etype]:
del self._storages[etype]
self.unmap_attribute(etype, attr)
def storage(self, etype, attr):
"""return the storage for the given entity type / attribute
"""
try:
return self._storages[etype][attr]
except KeyError:
raise Exception('no custom storage set for %s.%s' % (etype, attr))
# ISource interface #######################################################
def compile_rql(self, rql, sols):
rqlst = self.repo.vreg.rqlhelper.parse(rql)
rqlst.restricted_vars = ()
rqlst.children[0].solutions = sols
self.repo.querier.sqlgen_annotate(rqlst)
set_qdata(self.schema.rschema, rqlst, ())
return rqlst
def set_schema(self, schema):
"""set the instance'schema"""
self._cache = QueryCache(self.repo.config['rql-cache-size'])
self.cache_hit, self.cache_miss, self.no_cache = 0, 0, 0
self.schema = schema
try:
self._rql_sqlgen.schema = schema
except AttributeError:
pass # __init__
for authentifier in self.authentifiers:
authentifier.set_schema(self.schema)
clear_cache(self, 'need_fti_indexation')
def support_entity(self, etype, write=False):
"""return true if the given entity's type is handled by this adapter
if write is true, return true only if it's a RW support
"""
return not etype in NONSYSTEM_ETYPES
def support_relation(self, rtype, write=False):
"""return true if the given relation's type is handled by this adapter
if write is true, return true only if it's a RW support
"""
if write:
return not rtype in NONSYSTEM_RELATIONS
# due to current multi-sources implementation, the system source
# can't claim not supporting a relation
return True #not rtype == 'content_for'
def may_cross_relation(self, rtype):
return True
def authenticate(self, session, login, **kwargs):
"""return CWUser eid for the given login and other authentication
information found in kwargs, else raise `AuthenticationError`
"""
for authentifier in self.authentifiers:
try:
return authentifier.authenticate(session, login, **kwargs)
except AuthenticationError:
continue
raise AuthenticationError()
def syntax_tree_search(self, session, union, args=None, cachekey=None,
varmap=None):
"""return result from this source for a rql query (actually from
a rql syntax tree and a solution dictionary mapping each used
variable to a possible type). If cachekey is given, the query
necessary to fetch the results (but not the results themselves)
may be cached using this key.
"""
assert dbg_st_search(self.uri, union, varmap, args, cachekey)
# remember number of actually selected term (sql generation may append some)
if cachekey is None:
self.no_cache += 1
# generate sql query if we are able to do so (not supported types...)
sql, qargs, cbs = self._rql_sqlgen.generate(union, args, varmap)
else:
# sql may be cached
try:
sql, qargs, cbs = self._cache[cachekey]
self.cache_hit += 1
except KeyError:
self.cache_miss += 1
sql, qargs, cbs = self._rql_sqlgen.generate(union, args, varmap)
self._cache[cachekey] = sql, qargs, cbs
args = self.merge_args(args, qargs)
assert isinstance(sql, basestring), repr(sql)
try:
cursor = self.doexec(session, sql, args)
except (self.OperationalError, self.InterfaceError):
if session.mode == 'write':
# do not attempt to reconnect if there has been some write
# during the transaction
raise
# FIXME: better detection of deconnection pb
self.warning("trying to reconnect")
session.cnxset.reconnect(self)
cursor = self.doexec(session, sql, args)
except self.DbapiError as exc:
# We get this one with pyodbc and SQL Server when connection was reset
if exc.args[0] == '08S01' and session.mode != 'write':
self.warning("trying to reconnect")
session.cnxset.reconnect(self)
cursor = self.doexec(session, sql, args)
else:
raise
results = self.process_result(cursor, cbs, session=session)
assert dbg_results(results)
return results
def flying_insert(self, table, session, union, args=None, varmap=None):
"""similar as .syntax_tree_search, but inserts data in the
temporary table (on-the-fly if possible, eg for the system
source whose the given cursor come from). If not possible,
inserts all data by calling .executemany().
"""
assert dbg_st_search(
self.uri, union, varmap, args,
prefix='ON THE FLY temp data insertion into %s from' % table)
# generate sql queries if we are able to do so
sql, qargs, cbs = self._rql_sqlgen.generate(union, args, varmap)
query = 'INSERT INTO %s %s' % (table, sql.encode(self._dbencoding))
self.doexec(session, query, self.merge_args(args, qargs))
def manual_insert(self, results, table, session):
"""insert given result into a temporary table on the system source"""
if server.DEBUG & server.DBG_RQL:
print ' manual insertion of', len(results), 'results into', table
if not results:
return
query_args = ['%%(%s)s' % i for i in xrange(len(results[0]))]
query = 'INSERT INTO %s VALUES(%s)' % (table, ','.join(query_args))
kwargs_list = []
for row in results:
kwargs = {}
row = tuple(row)
for index, cell in enumerate(row):
if isinstance(cell, Binary):
cell = self._binary(cell.getvalue())
kwargs[str(index)] = cell
kwargs_list.append(kwargs)
self.doexecmany(session, query, kwargs_list)
def clean_temp_data(self, session, temptables):
"""remove temporary data, usually associated to temporary tables"""
if temptables:
for table in temptables:
try:
self.doexec(session,'DROP TABLE %s' % table)
except Exception:
pass
try:
del self._temp_table_data[table]
except KeyError:
continue
@contextmanager
def _storage_handler(self, entity, event):
# 1/ memorize values as they are before the storage is called.
# For instance, the BFSStorage will replace the `data`
# binary value with a Binary containing the destination path
# on the filesystem. To make the entity.data usage absolutely
# transparent, we'll have to reset entity.data to its binary
# value once the SQL query will be executed
restore_values = []
if isinstance(entity, list):
entities = entity
else:
entities = [entity]
etype = entities[0].__regid__
for attr, storage in self._storages.get(etype, {}).items():
for entity in entities:
if event == 'deleted':
storage.entity_deleted(entity, attr)
else:
edited = entity.cw_edited
if attr in edited:
handler = getattr(storage, 'entity_%s' % event)
to_restore = handler(entity, attr)
restore_values.append((entity, attr, to_restore))
try:
yield # 2/ execute the source's instructions
finally:
# 3/ restore original values
for entity, attr, value in restore_values:
entity.cw_edited.edited_attribute(attr, value)
def add_entity(self, session, entity):
"""add a new entity to the source"""
with self._storage_handler(entity, 'added'):
attrs = self.preprocess_entity(entity)
sql = self.sqlgen.insert(SQL_PREFIX + entity.cw_etype, attrs)
self.doexec(session, sql, attrs)
if session.ertype_supports_undo(entity.cw_etype):
self._record_tx_action(session, 'tx_entity_actions', 'C',
etype=entity.cw_etype, eid=entity.eid)
def update_entity(self, session, entity):
"""replace an entity in the source"""
with self._storage_handler(entity, 'updated'):
attrs = self.preprocess_entity(entity)
if session.ertype_supports_undo(entity.cw_etype):
changes = self._save_attrs(session, entity, attrs)
self._record_tx_action(session, 'tx_entity_actions', 'U',
etype=entity.cw_etype, eid=entity.eid,
changes=self._binary(dumps(changes)))
sql = self.sqlgen.update(SQL_PREFIX + entity.cw_etype, attrs,
['cw_eid'])
self.doexec(session, sql, attrs)
def delete_entity(self, session, entity):
"""delete an entity from the source"""
with self._storage_handler(entity, 'deleted'):
if session.ertype_supports_undo(entity.cw_etype):
attrs = [SQL_PREFIX + r.type
for r in entity.e_schema.subject_relations()
if (r.final or r.inlined) and not r in VIRTUAL_RTYPES]
changes = self._save_attrs(session, entity, attrs)
self._record_tx_action(session, 'tx_entity_actions', 'D',
etype=entity.cw_etype, eid=entity.eid,
changes=self._binary(dumps(changes)))
attrs = {'cw_eid': entity.eid}
sql = self.sqlgen.delete(SQL_PREFIX + entity.cw_etype, attrs)
self.doexec(session, sql, attrs)
def add_relation(self, session, subject, rtype, object, inlined=False):
"""add a relation to the source"""
self._add_relations(session, rtype, [(subject, object)], inlined)
if session.ertype_supports_undo(rtype):
self._record_tx_action(session, 'tx_relation_actions', 'A',
eid_from=subject, rtype=rtype, eid_to=object)
def add_relations(self, session, rtype, subj_obj_list, inlined=False):
"""add a relations to the source"""
self._add_relations(session, rtype, subj_obj_list, inlined)
if session.ertype_supports_undo(rtype):
for subject, object in subj_obj_list:
self._record_tx_action(session, 'tx_relation_actions', 'A',
eid_from=subject, rtype=rtype, eid_to=object)
def _add_relations(self, session, rtype, subj_obj_list, inlined=False):
"""add a relation to the source"""
sql = []
if inlined is False:
attrs = [{'eid_from': subject, 'eid_to': object}
for subject, object in subj_obj_list]
sql.append((self.sqlgen.insert('%s_relation' % rtype, attrs[0]), attrs))
else: # used by data import
etypes = {}
for subject, object in subj_obj_list:
etype = session.describe(subject)[0]
if etype in etypes:
etypes[etype].append((subject, object))
else:
etypes[etype] = [(subject, object)]
for subj_etype, subj_obj_list in etypes.iteritems():
attrs = [{'cw_eid': subject, SQL_PREFIX + rtype: object}
for subject, object in subj_obj_list]
sql.append((self.sqlgen.update(SQL_PREFIX + etype, attrs[0],
['cw_eid']),
attrs))
for statement, attrs in sql:
self.doexecmany(session, statement, attrs)
def delete_relation(self, session, subject, rtype, object):
"""delete a relation from the source"""
rschema = self.schema.rschema(rtype)
self._delete_relation(session, subject, rtype, object, rschema.inlined)
if session.ertype_supports_undo(rtype):
self._record_tx_action(session, 'tx_relation_actions', 'R',
eid_from=subject, rtype=rtype, eid_to=object)
def _delete_relation(self, session, subject, rtype, object, inlined=False):
"""delete a relation from the source"""
if inlined:
table = SQL_PREFIX + session.describe(subject)[0]
column = SQL_PREFIX + rtype
sql = 'UPDATE %s SET %s=NULL WHERE %seid=%%(eid)s' % (table, column,
SQL_PREFIX)
attrs = {'eid' : subject}
else:
attrs = {'eid_from': subject, 'eid_to': object}
sql = self.sqlgen.delete('%s_relation' % rtype, attrs)
self.doexec(session, sql, attrs)
def doexec(self, session, query, args=None, rollback=True):
"""Execute a query.
it's a function just so that it shows up in profiling
"""
cursor = session.cnxset[self.uri]
if server.DEBUG & server.DBG_SQL:
cnx = session.cnxset.connection(self.uri)
# getattr to get the actual connection if cnx is a ConnectionWrapper
# instance
print 'exec', query, args, getattr(cnx, '_cnx', cnx)
try:
# str(query) to avoid error if it's a unicode string
cursor.execute(str(query), args)
except Exception as ex:
if self.repo.config.mode != 'test':
# during test we get those message when trying to alter sqlite
# db schema
self.critical("sql: %r\n args: %s\ndbms message: %r",
query, args, ex.args[0])
if rollback:
try:
session.cnxset.connection(self.uri).rollback()
if self.repo.config.mode != 'test':
self.critical('transaction has been rolled back')
except Exception as ex:
pass
if ex.__class__.__name__ == 'IntegrityError':
# need string comparison because of various backends
for arg in ex.args:
# postgres, sqlserver
mo = re.search("unique_[a-z0-9]{32}", arg)
if mo is not None:
raise UniqueTogetherError(session, cstrname=mo.group(0))
# sqlite
mo = re.search('columns (.*) are not unique', arg)
if mo is not None: # sqlite in use
# we left chop the 'cw_' prefix of attribute names
rtypes = [c.strip()[3:]
for c in mo.group(1).split(',')]
raise UniqueTogetherError(session, rtypes=rtypes)
raise
return cursor
def doexecmany(self, session, query, args):
"""Execute a query.
it's a function just so that it shows up in profiling
"""
if server.DEBUG & server.DBG_SQL:
print 'execmany', query, 'with', len(args), 'arguments'
cursor = session.cnxset[self.uri]
try:
# str(query) to avoid error if it's a unicode string
cursor.executemany(str(query), args)
except Exception as ex:
if self.repo.config.mode != 'test':
# during test we get those message when trying to alter sqlite
# db schema
self.critical("sql many: %r\n args: %s\ndbms message: %r",
query, args, ex.args[0])
try:
session.cnxset.connection(self.uri).rollback()
if self.repo.config.mode != 'test':
self.critical('transaction has been rolled back')
except Exception:
pass
raise
# short cut to method requiring advanced db helper usage ##################
def update_rdef_column(self, session, rdef):
"""update physical column for a relation definition (final or inlined)
"""
table, column = rdef_table_column(rdef)
coltype, allownull = rdef_physical_info(self.dbhelper, rdef)
if not self.dbhelper.alter_column_support:
self.error("backend can't alter %s.%s to %s%s", table, column, coltype,
not allownull and 'NOT NULL' or '')
return
self.dbhelper.change_col_type(LogCursor(session.cnxset[self.uri]),
table, column, coltype, allownull)
self.info('altered %s.%s: now %s%s', table, column, coltype,
not allownull and 'NOT NULL' or '')
def update_rdef_null_allowed(self, session, rdef):
"""update NULL / NOT NULL of physical column for a relation definition
(final or inlined)
"""
if not self.dbhelper.alter_column_support:
# not supported (and NOT NULL not set by yams in that case, so no
# worry)
return
table, column = rdef_table_column(rdef)
coltype, allownull = rdef_physical_info(self.dbhelper, rdef)
self.dbhelper.set_null_allowed(LogCursor(session.cnxset[self.uri]),
table, column, coltype, allownull)
def update_rdef_indexed(self, session, rdef):
table, column = rdef_table_column(rdef)
if rdef.indexed:
self.create_index(session, table, column)
else:
self.drop_index(session, table, column)
def update_rdef_unique(self, session, rdef):
table, column = rdef_table_column(rdef)
if rdef.constraint_by_type('UniqueConstraint'):
self.create_index(session, table, column, unique=True)
else:
self.drop_index(session, table, column, unique=True)
def create_index(self, session, table, column, unique=False):
cursor = LogCursor(session.cnxset[self.uri])
self.dbhelper.create_index(cursor, table, column, unique)
def drop_index(self, session, table, column, unique=False):
cursor = LogCursor(session.cnxset[self.uri])
self.dbhelper.drop_index(cursor, table, column, unique)
# system source interface #################################################
def _eid_type_source(self, session, eid, sql, _retry=True):
try:
res = self.doexec(session, sql).fetchone()
if res is not None:
return res
except (self.OperationalError, self.InterfaceError):
if session.mode == 'read' and _retry:
self.warning("trying to reconnect (eid_type_source())")
session.cnxset.reconnect(self)
return self._eid_type_source(session, eid, sql, _retry=False)
except Exception:
assert session.cnxset, 'session has no connections set'
self.exception('failed to query entities table for eid %s', eid)
raise UnknownEid(eid)
def eid_type_source(self, session, eid): # pylint: disable=E0202
"""return a tuple (type, source, extid) for the entity with id <eid>"""
sql = 'SELECT type, source, extid, asource FROM entities WHERE eid=%s' % eid
res = self._eid_type_source(session, eid, sql)
if res[-2] is not None:
if not isinstance(res, list):
res = list(res)
res[-2] = b64decode(res[-2])
return res
def eid_type_source_pre_131(self, session, eid):
"""return a tuple (type, source, extid) for the entity with id <eid>"""
sql = 'SELECT type, source, extid FROM entities WHERE eid=%s' % eid
res = self._eid_type_source(session, eid, sql)
if not isinstance(res, list):
res = list(res)
if res[-1] is not None:
res[-1] = b64decode(res[-1])
res.append(res[1])
return res
def extid2eid(self, session, source_uri, extid):
"""get eid from an external id. Return None if no record found."""
assert isinstance(extid, str)
cursor = self.doexec(session,
'SELECT eid FROM entities '
'WHERE extid=%(x)s AND source=%(s)s',
{'x': b64encode(extid), 's': source_uri})
# XXX testing rowcount cause strange bug with sqlite, results are there
# but rowcount is 0
#if cursor.rowcount > 0:
try:
result = cursor.fetchone()
if result:
return result[0]
except Exception:
pass
return None
def make_temp_table_name(self, table):
return self.dbhelper.temporary_table_name(table)
def temp_table_def(self, selected, sol, table):
return make_schema(selected, sol, table, self.dbhelper.TYPE_MAPPING)
def create_temp_table(self, session, table, schema):
# we don't want on commit drop, this may cause problem when
# running with an ldap source, and table will be deleted manually any way
# on commit
sql = self.dbhelper.sql_temporary_table(table, schema, False)
self.doexec(session, sql)
def _create_eid_sqlite(self, session):
with self._eid_cnx_lock:
for sql in self.dbhelper.sqls_increment_sequence('entities_id_seq'):
cursor = self.doexec(session, sql)
return cursor.fetchone()[0]
def create_eid(self, session): # pylint: disable=E0202
# lock needed to prevent 'Connection is busy with results for another
# command (0)' errors with SQLServer
with self._eid_cnx_lock:
return self._create_eid() # pylint: disable=E1102
def _create_eid(self): # pylint: disable=E0202
# internal function doing the eid creation without locking.
# needed for the recursive handling of disconnections (otherwise we
# deadlock on self._eid_cnx_lock
if self._eid_creation_cnx is None:
self._eid_creation_cnx = self.get_connection()
cnx = self._eid_creation_cnx
try:
cursor = cnx.cursor()
for sql in self.dbhelper.sqls_increment_sequence('entities_id_seq'):
cursor.execute(sql)
eid = cursor.fetchone()[0]
except (self.OperationalError, self.InterfaceError):
# FIXME: better detection of deconnection pb
self.warning("trying to reconnect create eid connection")
self._eid_creation_cnx = None
return self._create_eid() # pylint: disable=E1102
except self.DbapiError as exc:
# We get this one with pyodbc and SQL Server when connection was reset
if exc.args[0] == '08S01':
self.warning("trying to reconnect create eid connection")
self._eid_creation_cnx = None
return self._create_eid() # pylint: disable=E1102
else:
raise
except Exception: # WTF?
cnx.rollback()
self._eid_creation_cnx = None
self.exception('create eid failed in an unforeseen way on SQL statement %s', sql)
raise
else:
cnx.commit()
return eid
def _handle_is_relation_sql(self, session, sql, attrs):
""" Handler for specific is_relation sql that may be
overwritten in some stores"""
self.doexec(session, sql % attrs)
_handle_insert_entity_sql = doexec
_handle_is_instance_of_sql = _handle_source_relation_sql = _handle_is_relation_sql
def add_info(self, session, entity, source, extid, complete):
"""add type and source info for an eid into the system table"""
# begin by inserting eid/type/source/extid into the entities table
if extid is not None:
assert isinstance(extid, str)
extid = b64encode(extid)
uri = 'system' if source.copy_based_source else source.uri
attrs = {'type': entity.cw_etype, 'eid': entity.eid, 'extid': extid,
'source': uri, 'asource': source.uri, 'mtime': datetime.utcnow()}
self._handle_insert_entity_sql(session, self.sqlgen.insert('entities', attrs), attrs)
# insert core relations: is, is_instance_of and cw_source
try:
self._handle_is_relation_sql(session, 'INSERT INTO is_relation(eid_from,eid_to) VALUES (%s,%s)',
(entity.eid, eschema_eid(session, entity.e_schema)))
except IndexError:
# during schema serialization, skip
pass
else:
for eschema in entity.e_schema.ancestors() + [entity.e_schema]:
self._handle_is_relation_sql(session,
'INSERT INTO is_instance_of_relation(eid_from,eid_to) VALUES (%s,%s)',
(entity.eid, eschema_eid(session, eschema)))
if 'CWSource' in self.schema and source.eid is not None: # else, cw < 3.10
self._handle_is_relation_sql(session, 'INSERT INTO cw_source_relation(eid_from,eid_to) VALUES (%s,%s)',
(entity.eid, source.eid))
# now we can update the full text index
if self.do_fti and self.need_fti_indexation(entity.cw_etype):
if complete:
entity.complete(entity.e_schema.indexable_attributes())
self.index_entity(session, entity=entity)
def update_info(self, session, entity, need_fti_update):
"""mark entity as being modified, fulltext reindex if needed"""
if self.do_fti and need_fti_update:
# reindex the entity only if this query is updating at least
# one indexable attribute
self.index_entity(session, entity=entity)
# update entities.mtime.
# XXX Only if entity.cw_etype in self.multisources_etypes?
attrs = {'eid': entity.eid, 'mtime': datetime.utcnow()}
self.doexec(session, self.sqlgen.update('entities', attrs, ['eid']), attrs)
def delete_info_multi(self, session, entities, uri):
"""delete system information on deletion of a list of entities with the
same etype and belinging to the same source
* update the fti
* remove record from the `entities` table
* transfer it to the `deleted_entities`
"""
self.fti_unindex_entities(session, entities)
attrs = {'eid': '(%s)' % ','.join([str(_e.eid) for _e in entities])}
self.doexec(session, self.sqlgen.delete_many('entities', attrs), attrs)
if entities[0].__regid__ not in self.multisources_etypes:
return
attrs = {'type': entities[0].__regid__,
'source': uri, 'dtime': datetime.utcnow()}
for entity in entities:
extid = entity.cw_metainformation()['extid']
if extid is not None:
assert isinstance(extid, str), type(extid)
extid = b64encode(extid)
attrs.update({'eid': entity.eid, 'extid': extid})
self.doexec(session, self.sqlgen.insert('deleted_entities', attrs), attrs)
def modified_entities(self, session, etypes, mtime):
"""return a 2-uple:
* list of (etype, eid) of entities of the given types which have been
modified since the given timestamp (actually entities whose full text
index content has changed)
* list of (etype, eid) of entities of the given types which have been
deleted since the given timestamp
"""
for etype in etypes:
if not etype in self.multisources_etypes:
self.error('%s not listed as a multi-sources entity types. '
'Modify your configuration' % etype)
self.multisources_etypes.add(etype)
modsql = _modified_sql('entities', etypes)
cursor = self.doexec(session, modsql, {'time': mtime})
modentities = cursor.fetchall()
delsql = _modified_sql('deleted_entities', etypes)
cursor = self.doexec(session, delsql, {'time': mtime})
delentities = cursor.fetchall()
return modentities, delentities
# undo support #############################################################
def undoable_transactions(self, session, ueid=None, **actionfilters):
"""See :class:`cubicweb.dbapi.Connection.undoable_transactions`"""
# force filtering to session's user if not a manager
if not session.user.is_in_group('managers'):
ueid = session.user.eid
restr = {}
if ueid is not None:
restr['tx_user'] = ueid
sql = self.sqlgen.select('transactions', restr, ('tx_uuid', 'tx_time', 'tx_user'))
if actionfilters:
# we will need subqueries to filter transactions according to
# actions done
tearestr = {} # filters on the tx_entity_actions table
trarestr = {} # filters on the tx_relation_actions table
genrestr = {} # generic filters, appliyable to both table
# unless public explicitly set to false, we only consider public
# actions
if actionfilters.pop('public', True):
genrestr['txa_public'] = True
# put additional filters in trarestr and/or tearestr
for key, val in actionfilters.iteritems():
if key == 'etype':
# filtering on etype implies filtering on entity actions
# only, and with no eid specified
assert actionfilters.get('action', 'C') in 'CUD'
assert not 'eid' in actionfilters
tearestr['etype'] = val
elif key == 'eid':
# eid filter may apply to 'eid' of tx_entity_actions or to
# 'eid_from' OR 'eid_to' of tx_relation_actions
if actionfilters.get('action', 'C') in 'CUD':
tearestr['eid'] = val
if actionfilters.get('action', 'A') in 'AR':
trarestr['eid_from'] = val
trarestr['eid_to'] = val
elif key == 'action':
if val in 'CUD':
tearestr['txa_action'] = val
else:
assert val in 'AR'
trarestr['txa_action'] = val
else:
raise AssertionError('unknow filter %s' % key)
assert trarestr or tearestr, "can't only filter on 'public'"
subqsqls = []
# append subqueries to the original query, using EXISTS()
if trarestr or (genrestr and not tearestr):
trarestr.update(genrestr)
trasql = self.sqlgen.select('tx_relation_actions', trarestr, ('1',))
if 'eid_from' in trarestr:
# replace AND by OR between eid_from/eid_to restriction
trasql = sql_or_clauses(trasql, ['eid_from = %(eid_from)s',
'eid_to = %(eid_to)s'])
trasql += ' AND transactions.tx_uuid=tx_relation_actions.tx_uuid'
subqsqls.append('EXISTS(%s)' % trasql)
if tearestr or (genrestr and not trarestr):
tearestr.update(genrestr)
teasql = self.sqlgen.select('tx_entity_actions', tearestr, ('1',))
teasql += ' AND transactions.tx_uuid=tx_entity_actions.tx_uuid'
subqsqls.append('EXISTS(%s)' % teasql)
if restr:
sql += ' AND %s' % ' OR '.join(subqsqls)
else:
sql += ' WHERE %s' % ' OR '.join(subqsqls)
restr.update(trarestr)
restr.update(tearestr)
# we want results ordered by transaction's time descendant
sql += ' ORDER BY tx_time DESC'
cu = self.doexec(session, sql, restr)
# turn results into transaction objects
return [tx.Transaction(*args) for args in cu.fetchall()]
def tx_info(self, session, txuuid):
"""See :class:`cubicweb.dbapi.Connection.transaction_info`"""
return tx.Transaction(txuuid, *self._tx_info(session, txuuid))
def tx_actions(self, session, txuuid, public):
"""See :class:`cubicweb.dbapi.Connection.transaction_actions`"""
self._tx_info(session, txuuid)
restr = {'tx_uuid': txuuid}
if public:
restr['txa_public'] = True
# XXX use generator to avoid loading everything in memory?
sql = self.sqlgen.select('tx_entity_actions', restr,
('txa_action', 'txa_public', 'txa_order',
'etype', 'eid', 'changes'))
cu = self.doexec(session, sql, restr)
actions = [tx.EntityAction(a,p,o,et,e,c and loads(self.binary_to_str(c)))
for a,p,o,et,e,c in cu.fetchall()]
sql = self.sqlgen.select('tx_relation_actions', restr,
('txa_action', 'txa_public', 'txa_order',
'rtype', 'eid_from', 'eid_to'))
cu = self.doexec(session, sql, restr)
actions += [tx.RelationAction(*args) for args in cu.fetchall()]
return sorted(actions, key=lambda x: x.order)
def undo_transaction(self, session, txuuid):
"""See :class:`cubicweb.dbapi.Connection.undo_transaction`
important note: while undoing of a transaction, only hooks in the
'integrity', 'activeintegrity' and 'undo' categories are called.
"""
# set mode so connections set isn't released subsquently until commit/rollback
session.mode = 'write'
errors = []
session.transaction_data['undoing_uuid'] = txuuid
with session.deny_all_hooks_but('integrity', 'activeintegrity', 'undo'):
with session.security_enabled(read=False):
for action in reversed(self.tx_actions(session, txuuid, False)):
undomethod = getattr(self, '_undo_%s' % action.action.lower())
errors += undomethod(session, action)
# remove the transactions record
self.doexec(session,
"DELETE FROM transactions WHERE tx_uuid='%s'" % txuuid)
if errors:
raise UndoTransactionException(txuuid, errors)
else:
return
def start_undoable_transaction(self, session, uuid):
"""session callback to insert a transaction record in the transactions
table when some undoable transaction is started
"""
ueid = session.user.eid
attrs = {'tx_uuid': uuid, 'tx_user': ueid, 'tx_time': datetime.utcnow()}
self.doexec(session, self.sqlgen.insert('transactions', attrs), attrs)
def _save_attrs(self, session, entity, attrs):
"""return a pickleable dictionary containing current values for given
attributes of the entity
"""
restr = {'cw_eid': entity.eid}
sql = self.sqlgen.select(SQL_PREFIX + entity.cw_etype, restr, attrs)
cu = self.doexec(session, sql, restr)
values = dict(zip(attrs, cu.fetchone()))
# ensure backend specific binary are converted back to string
eschema = entity.e_schema
for column in attrs:
# [3:] remove 'cw_' prefix
attr = column[3:]
if not eschema.subjrels[attr].final:
continue
if eschema.destination(attr) in ('Password', 'Bytes'):
value = values[column]
if value is not None:
values[column] = self.binary_to_str(value)
return values
def _record_tx_action(self, session, table, action, **kwargs):
"""record a transaction action in the given table (either
'tx_entity_actions' or 'tx_relation_action')
"""
kwargs['tx_uuid'] = session.transaction_uuid()
kwargs['txa_action'] = action
kwargs['txa_order'] = session.transaction_inc_action_counter()
kwargs['txa_public'] = session.running_dbapi_query
self.doexec(session, self.sqlgen.insert(table, kwargs), kwargs)
def _tx_info(self, session, txuuid):
"""return transaction's time and user of the transaction with the given uuid.
raise `NoSuchTransaction` if there is no such transaction of if the
session's user isn't allowed to see it.
"""
restr = {'tx_uuid': txuuid}
sql = self.sqlgen.select('transactions', restr, ('tx_time', 'tx_user'))
cu = self.doexec(session, sql, restr)
try:
time, ueid = cu.fetchone()
except TypeError:
raise tx.NoSuchTransaction(txuuid)
if not (session.user.is_in_group('managers')
or session.user.eid == ueid):
raise tx.NoSuchTransaction(txuuid)
return time, ueid
def _reedit_entity(self, entity, changes, err):
session = entity._cw
eid = entity.eid
entity.cw_edited = edited = EditedEntity(entity)
# check for schema changes, entities linked through inlined relation
# still exists, rewrap binary values
eschema = entity.e_schema
getrschema = eschema.subjrels
for column, value in changes.items():
rtype = column[len(SQL_PREFIX):]
if rtype == "eid":
continue # XXX should even `eid` be stored in action changes?
try:
rschema = getrschema[rtype]
except KeyError:
err(session._("can't restore relation %(rtype)s of entity %(eid)s, "
"this relation does not exist in the schema anymore.")
% {'rtype': rtype, 'eid': eid})
if not rschema.final:
if not rschema.inlined:
assert value is None
# rschema is an inlined relation
elif value is not None:
# not a deletion: we must put something in edited
try:
entity._cw.entity_from_eid(value) # check target exists
edited[rtype] = value
except UnknownEid:
err(session._("can't restore entity %(eid)s of type %(eschema)s, "
"target of %(rtype)s (eid %(value)s) does not exist any longer")
% locals())
elif eschema.destination(rtype) in ('Bytes', 'Password'):
changes[column] = self._binary(value)
edited[rtype] = Binary(value)
elif isinstance(value, str):
edited[rtype] = unicode(value, session.encoding, 'replace')
else:
edited[rtype] = value
# This must only be done after init_entitiy_caches : defered in calling functions
# edited.check()
def _undo_d(self, session, action):
"""undo an entity deletion"""
errors = []
err = errors.append
eid = action.eid
etype = action.etype
_ = session._
# get an entity instance
try:
entity = self.repo.vreg['etypes'].etype_class(etype)(session)
except Exception:
err("can't restore entity %s of type %s, type no more supported"
% (eid, etype))
return errors
self._reedit_entity(entity, action.changes, err)
entity.eid = eid
session.repo.init_entity_caches(session, entity, self)
entity.cw_edited.check()
self.repo.hm.call_hooks('before_add_entity', session, entity=entity)
# restore the entity
action.changes['cw_eid'] = eid
sql = self.sqlgen.insert(SQL_PREFIX + etype, action.changes)
self.doexec(session, sql, action.changes)
# restore record in entities (will update fti if needed)
self.add_info(session, entity, self, None, True)
# remove record from deleted_entities if entity's type is multi-sources
if entity.cw_etype in self.multisources_etypes:
self.doexec(session,
'DELETE FROM deleted_entities WHERE eid=%s' % eid)
self.repo.hm.call_hooks('after_add_entity', session, entity=entity)
return errors
def _undo_r(self, session, action):
"""undo a relation removal"""
errors = []
subj, rtype, obj = action.eid_from, action.rtype, action.eid_to
try:
sentity, oentity, rdef = _undo_rel_info(session, subj, rtype, obj)
except _UndoException as ex:
errors.append(unicode(ex))
else:
for role, entity in (('subject', sentity),
('object', oentity)):
try:
_undo_check_relation_target(entity, rdef, role)
except _UndoException as ex:
errors.append(unicode(ex))
continue
if not errors:
self.repo.hm.call_hooks('before_add_relation', session,
eidfrom=subj, rtype=rtype, eidto=obj)
# add relation in the database
self._add_relations(session, rtype, [(subj, obj)], rdef.rtype.inlined)
# set related cache
session.update_rel_cache_add(subj, rtype, obj, rdef.rtype.symmetric)
self.repo.hm.call_hooks('after_add_relation', session,
eidfrom=subj, rtype=rtype, eidto=obj)
return errors
def _undo_c(self, session, action):
"""undo an entity creation"""
eid = action.eid
# XXX done to avoid fetching all remaining relation for the entity
# we should find an efficient way to do this (keeping current veolidf
# massive deletion performance)
if _undo_has_later_transaction(session, eid):
msg = session._('some later transaction(s) touch entity, undo them '
'first')
raise ValidationError(eid, {None: msg})
etype = action.etype
# get an entity instance
try:
entity = self.repo.vreg['etypes'].etype_class(etype)(session)
except Exception:
return [session._(
"Can't undo creation of entity %(eid)s of type %(etype)s, type "
"no more supported" % {'eid': eid, 'etype': etype})]
entity.eid = eid
# for proper eid/type cache update
CleanupDeletedEidsCacheOp.get_instance(session).add_data(eid)
self.repo.hm.call_hooks('before_delete_entity', session, entity=entity)
# remove is / is_instance_of which are added using sql by hooks, hence
# unvisible as transaction action
self.doexec(session, 'DELETE FROM is_relation WHERE eid_from=%s' % eid)
self.doexec(session, 'DELETE FROM is_instance_of_relation WHERE eid_from=%s' % eid)
self.doexec(session, 'DELETE FROM cw_source_relation WHERE eid_from=%s' % self.eid)
# XXX check removal of inlined relation?
# delete the entity
attrs = {'cw_eid': eid}
sql = self.sqlgen.delete(SQL_PREFIX + entity.cw_etype, attrs)
self.doexec(session, sql, attrs)
# remove record from entities (will update fti if needed)
self.delete_info_multi(session, [entity], self.uri)
self.repo.hm.call_hooks('after_delete_entity', session, entity=entity)
return ()
def _undo_u(self, session, action):
"""undo an entity update"""
errors = []
err = errors.append
try:
entity = session.entity_from_eid(action.eid)
except UnknownEid:
err(session._("can't restore state of entity %s, it has been "
"deleted inbetween") % action.eid)
return errors
self._reedit_entity(entity, action.changes, err)
entity.cw_edited.check()
self.repo.hm.call_hooks('before_update_entity', session, entity=entity)
sql = self.sqlgen.update(SQL_PREFIX + entity.cw_etype, action.changes,
['cw_eid'])
self.doexec(session, sql, action.changes)
self.repo.hm.call_hooks('after_update_entity', session, entity=entity)
return errors
def _undo_a(self, session, action):
"""undo a relation addition"""
errors = []
subj, rtype, obj = action.eid_from, action.rtype, action.eid_to
try:
sentity, oentity, rdef = _undo_rel_info(session, subj, rtype, obj)
except _UndoException as ex:
errors.append(unicode(ex))
else:
rschema = rdef.rtype
if rschema.inlined:
sql = 'SELECT 1 FROM cw_%s WHERE cw_eid=%s and cw_%s=%s'\
% (sentity.cw_etype, subj, rtype, obj)
else:
sql = 'SELECT 1 FROM %s_relation WHERE eid_from=%s and eid_to=%s'\
% (rtype, subj, obj)
cu = self.doexec(session, sql)
if cu.fetchone() is None:
errors.append(session._(
"Can't undo addition of relation %(rtype)s from %(subj)s to"
" %(obj)s, doesn't exist anymore" % locals()))
if not errors:
self.repo.hm.call_hooks('before_delete_relation', session,
eidfrom=subj, rtype=rtype, eidto=obj)
# delete relation from the database
self._delete_relation(session, subj, rtype, obj, rschema.inlined)
# set related cache
session.update_rel_cache_del(subj, rtype, obj, rschema.symmetric)
self.repo.hm.call_hooks('after_delete_relation', session,
eidfrom=subj, rtype=rtype, eidto=obj)
return errors
# full text index handling #################################################
@cached
def need_fti_indexation(self, etype):
eschema = self.schema.eschema(etype)
if any(eschema.indexable_attributes()):
return True
if any(eschema.fulltext_containers()):
return True
return False
def index_entity(self, session, entity):
"""create an operation to [re]index textual content of the given entity
on commit
"""
FTIndexEntityOp.get_instance(session).add_data(entity.eid)
def fti_unindex_entities(self, session, entities):
"""remove text content for entities from the full text index
"""
cursor = session.cnxset['system']
cursor_unindex_object = self.dbhelper.cursor_unindex_object
try:
for entity in entities:
cursor_unindex_object(entity.eid, cursor)
except Exception: # let KeyboardInterrupt / SystemExit propagate
self.exception('error while unindexing %s', entity)
def fti_index_entities(self, session, entities):
"""add text content of created/modified entities to the full text index
"""
cursor_index_object = self.dbhelper.cursor_index_object
cursor = session.cnxset['system']
try:
# use cursor_index_object, not cursor_reindex_object since
# unindexing done in the FTIndexEntityOp
for entity in entities:
cursor_index_object(entity.eid,
entity.cw_adapt_to('IFTIndexable'),
cursor)
except Exception: # let KeyboardInterrupt / SystemExit propagate
self.exception('error while indexing %s', entity)
class FTIndexEntityOp(hook.DataOperationMixIn, hook.LateOperation):
"""operation to delay entity full text indexation to commit
since fti indexing may trigger discovery of other entities, it should be
triggered on precommit, not commit, and this should be done after other
precommit operation which may add relations to the entity
"""
def precommit_event(self):
session = self.session
source = session.repo.system_source
pendingeids = session.transaction_data.get('pendingeids', ())
done = session.transaction_data.setdefault('indexedeids', set())
to_reindex = set()
for eid in self.get_data():
if eid in pendingeids or eid in done:
# entity added and deleted in the same transaction or already
# processed
continue
done.add(eid)
iftindexable = session.entity_from_eid(eid).cw_adapt_to('IFTIndexable')
to_reindex |= set(iftindexable.fti_containers())
source.fti_unindex_entities(session, to_reindex)
source.fti_index_entities(session, to_reindex)
def sql_schema(driver):
helper = get_db_helper(driver)
typemap = helper.TYPE_MAPPING
schema = """
/* Create the repository's system database */
%s
CREATE TABLE entities (
eid INTEGER PRIMARY KEY NOT NULL,
type VARCHAR(64) NOT NULL,
source VARCHAR(128) NOT NULL,
asource VARCHAR(128) NOT NULL,
mtime %s NOT NULL,
extid VARCHAR(256)
);;
CREATE INDEX entities_type_idx ON entities(type);;
CREATE INDEX entities_mtime_idx ON entities(mtime);;
CREATE INDEX entities_extid_idx ON entities(extid);;
CREATE TABLE deleted_entities (
eid INTEGER PRIMARY KEY NOT NULL,
type VARCHAR(64) NOT NULL,
source VARCHAR(128) NOT NULL,
dtime %s NOT NULL,
extid VARCHAR(256)
);;
CREATE INDEX deleted_entities_type_idx ON deleted_entities(type);;
CREATE INDEX deleted_entities_dtime_idx ON deleted_entities(dtime);;
CREATE INDEX deleted_entities_extid_idx ON deleted_entities(extid);;
CREATE TABLE transactions (
tx_uuid CHAR(32) PRIMARY KEY NOT NULL,
tx_user INTEGER NOT NULL,
tx_time %s NOT NULL
);;
CREATE INDEX transactions_tx_user_idx ON transactions(tx_user);;
CREATE INDEX transactions_tx_time_idx ON transactions(tx_time);;
CREATE TABLE tx_entity_actions (
tx_uuid CHAR(32) REFERENCES transactions(tx_uuid) ON DELETE CASCADE,
txa_action CHAR(1) NOT NULL,
txa_public %s NOT NULL,
txa_order INTEGER,
eid INTEGER NOT NULL,
etype VARCHAR(64) NOT NULL,
changes %s
);;
CREATE INDEX tx_entity_actions_txa_action_idx ON tx_entity_actions(txa_action);;
CREATE INDEX tx_entity_actions_txa_public_idx ON tx_entity_actions(txa_public);;
CREATE INDEX tx_entity_actions_eid_idx ON tx_entity_actions(eid);;
CREATE INDEX tx_entity_actions_etype_idx ON tx_entity_actions(etype);;
CREATE INDEX tx_entity_actions_tx_uuid_idx ON tx_entity_actions(tx_uuid);;
CREATE TABLE tx_relation_actions (
tx_uuid CHAR(32) REFERENCES transactions(tx_uuid) ON DELETE CASCADE,
txa_action CHAR(1) NOT NULL,
txa_public %s NOT NULL,
txa_order INTEGER,
eid_from INTEGER NOT NULL,
eid_to INTEGER NOT NULL,
rtype VARCHAR(256) NOT NULL
);;
CREATE INDEX tx_relation_actions_txa_action_idx ON tx_relation_actions(txa_action);;
CREATE INDEX tx_relation_actions_txa_public_idx ON tx_relation_actions(txa_public);;
CREATE INDEX tx_relation_actions_eid_from_idx ON tx_relation_actions(eid_from);;
CREATE INDEX tx_relation_actions_eid_to_idx ON tx_relation_actions(eid_to);;
CREATE INDEX tx_relation_actions_tx_uuid_idx ON tx_relation_actions(tx_uuid);;
""" % (helper.sql_create_sequence('entities_id_seq').replace(';', ';;'),
typemap['Datetime'], typemap['Datetime'], typemap['Datetime'],
typemap['Boolean'], typemap['Bytes'], typemap['Boolean'])
if helper.backend_name == 'sqlite':
# sqlite support the ON DELETE CASCADE syntax but do nothing
schema += '''
CREATE TRIGGER fkd_transactions
BEFORE DELETE ON transactions
FOR EACH ROW BEGIN
DELETE FROM tx_entity_actions WHERE tx_uuid=OLD.tx_uuid;
DELETE FROM tx_relation_actions WHERE tx_uuid=OLD.tx_uuid;
END;;
'''
return schema
def sql_drop_schema(driver):
helper = get_db_helper(driver)
return """
%s
DROP TABLE entities;
DROP TABLE deleted_entities;
DROP TABLE tx_entity_actions;
DROP TABLE tx_relation_actions;
DROP TABLE transactions;
""" % helper.sql_drop_sequence('entities_id_seq')
def grant_schema(user, set_owner=True):
result = ''
for table in ('entities', 'deleted_entities', 'entities_id_seq',
'transactions', 'tx_entity_actions', 'tx_relation_actions'):
if set_owner:
result = 'ALTER TABLE %s OWNER TO %s;\n' % (table, user)
result += 'GRANT ALL ON %s TO %s;\n' % (table, user)
return result
class BaseAuthentifier(object):
def __init__(self, source=None):
self.source = source
def set_schema(self, schema):
"""set the instance'schema"""
pass
class LoginPasswordAuthentifier(BaseAuthentifier):
passwd_rql = 'Any P WHERE X is CWUser, X login %(login)s, X upassword P'
auth_rql = ('Any X WHERE X is CWUser, X login %(login)s, X upassword %(pwd)s, '
'X cw_source S, S name "system"')
_sols = ({'X': 'CWUser', 'P': 'Password', 'S': 'CWSource'},)
def set_schema(self, schema):
"""set the instance'schema"""
if 'CWUser' in schema: # probably an empty schema if not true...
# rql syntax trees used to authenticate users
self._passwd_rqlst = self.source.compile_rql(self.passwd_rql, self._sols)
self._auth_rqlst = self.source.compile_rql(self.auth_rql, self._sols)
def authenticate(self, session, login, password=None, **kwargs):
"""return CWUser eid for the given login/password if this account is
defined in this source, else raise `AuthenticationError`
two queries are needed since passwords are stored crypted, so we have
to fetch the salt first
"""
args = {'login': login, 'pwd' : None}
if password is not None:
rset = self.source.syntax_tree_search(session, self._passwd_rqlst, args)
try:
pwd = rset[0][0]
except IndexError:
raise AuthenticationError('bad login')
if pwd is None:
# if pwd is None but a password is provided, something is wrong
raise AuthenticationError('bad password')
# passwords are stored using the Bytes type, so we get a StringIO
args['pwd'] = Binary(crypt_password(password, pwd.getvalue()))
# get eid from login and (crypted) password
rset = self.source.syntax_tree_search(session, self._auth_rqlst, args)
try:
user = rset[0][0]
# If the stored hash uses a deprecated scheme (e.g. DES or MD5 used
# before 3.14.7), update with a fresh one
if pwd.getvalue():
verify, newhash = verify_and_update(password, pwd.getvalue())
if not verify: # should not happen, but...
raise AuthenticationError('bad password')
if newhash:
session.system_sql("UPDATE %s SET %s=%%(newhash)s WHERE %s=%%(login)s" % (
SQL_PREFIX + 'CWUser',
SQL_PREFIX + 'upassword',
SQL_PREFIX + 'login'),
{'newhash': self.source._binary(newhash),
'login': login})
session.commit(free_cnxset=False)
return user
except IndexError:
raise AuthenticationError('bad password')
class EmailPasswordAuthentifier(BaseAuthentifier):
def authenticate(self, session, login, **authinfo):
# email_auth flag prevent from infinite recursion (call to
# repo.check_auth_info at the end of this method may lead us here again)
if not '@' in login or authinfo.pop('email_auth', None):
raise AuthenticationError('not an email')
rset = session.execute('Any L WHERE U login L, U primary_email M, '
'M address %(login)s', {'login': login},
build_descr=False)
if rset.rowcount != 1:
raise AuthenticationError('unexisting email')
login = rset.rows[0][0]
authinfo['email_auth'] = True
return self.source.repo.check_auth_info(session, login, authinfo)
class DatabaseIndependentBackupRestore(object):
"""Helper class to perform db backend agnostic backup and restore
The backup and restore methods are used to dump / restore the
system database in a database independent format. The file is a
Zip archive containing the following files:
* format.txt: the format of the archive. Currently '1.0'
* tables.txt: list of filenames in the archive tables/ directory
* sequences.txt: list of filenames in the archive sequences/ directory
* versions.txt: the list of cube versions from CWProperty
* tables/<tablename>.<chunkno>: pickled data
* sequences/<sequencename>: pickled data
The pickled data format for tables and sequences is a tuple of 3 elements:
* the table name
* a tuple of column names
* a list of rows (as tuples with one element per column)
Tables are saved in chunks in different files in order to prevent
a too high memory consumption.
"""
def __init__(self, source):
"""
:param: source an instance of the system source
"""
self._source = source
self.logger = logging.getLogger('cubicweb.ctl')
self.logger.setLevel(logging.INFO)
self.logger.addHandler(logging.StreamHandler(sys.stdout))
self.schema = self._source.schema
self.dbhelper = self._source.dbhelper
self.cnx = None
self.cursor = None
self.sql_generator = sqlgen.SQLGenerator()
def get_connection(self):
return self._source.get_connection()
def backup(self, backupfile):
archive = zipfile.ZipFile(backupfile, 'w', allowZip64=True)
self.cnx = self.get_connection()
try:
self.cursor = self.cnx.cursor()
self.cursor.arraysize=100
self.logger.info('writing metadata')
self.write_metadata(archive)
for seq in self.get_sequences():
self.logger.info('processing sequence %s', seq)
self.write_sequence(archive, seq)
for table in self.get_tables():
self.logger.info('processing table %s', table)
self.write_table(archive, table)
finally:
archive.close()
self.cnx.close()
self.logger.info('done')
def get_tables(self):
non_entity_tables = ['entities',
'deleted_entities',
'transactions',
'tx_entity_actions',
'tx_relation_actions',
]
etype_tables = []
relation_tables = []
prefix = 'cw_'
for etype in self.schema.entities():
eschema = self.schema.eschema(etype)
if eschema.final:
continue
etype_tables.append('%s%s'%(prefix, etype))
for rtype in self.schema.relations():
rschema = self.schema.rschema(rtype)
if rschema.final or rschema.inlined or rschema in VIRTUAL_RTYPES:
continue
relation_tables.append('%s_relation' % rtype)
return non_entity_tables + etype_tables + relation_tables
def get_sequences(self):
return ['entities_id_seq']
def write_metadata(self, archive):
archive.writestr('format.txt', '1.0')
archive.writestr('tables.txt', '\n'.join(self.get_tables()))
archive.writestr('sequences.txt', '\n'.join(self.get_sequences()))
versions = self._get_versions()
versions_str = '\n'.join('%s %s' % (k,v)
for k,v in versions)
archive.writestr('versions.txt', versions_str)
def write_sequence(self, archive, seq):
sql = self.dbhelper.sql_sequence_current_state(seq)
columns, rows_iterator = self._get_cols_and_rows(sql)
rows = list(rows_iterator)
serialized = self._serialize(seq, columns, rows)
archive.writestr('sequences/%s' % seq, serialized)
def write_table(self, archive, table):
nb_lines_sql = 'SELECT COUNT(*) FROM %s' % table
self.cursor.execute(nb_lines_sql)
rowcount = self.cursor.fetchone()[0]
sql = 'SELECT * FROM %s' % table
columns, rows_iterator = self._get_cols_and_rows(sql)
self.logger.info('number of rows: %d', rowcount)
if table.startswith('cw_'): # entities
blocksize = 2000
else: # relations and metadata
blocksize = 10000
if rowcount > 0:
for i, start in enumerate(xrange(0, rowcount, blocksize)):
rows = list(itertools.islice(rows_iterator, blocksize))
serialized = self._serialize(table, columns, rows)
archive.writestr('tables/%s.%04d' % (table, i), serialized)
self.logger.debug('wrote rows %d to %d (out of %d) to %s.%04d',
start, start+len(rows)-1,
rowcount,
table, i)
else:
rows = []
serialized = self._serialize(table, columns, rows)
archive.writestr('tables/%s.%04d' % (table, 0), serialized)
def _get_cols_and_rows(self, sql):
process_result = self._source.iter_process_result
self.cursor.execute(sql)
columns = (d[0] for d in self.cursor.description)
rows = process_result(self.cursor)
return tuple(columns), rows
def _serialize(self, name, columns, rows):
return dumps((name, columns, rows), pickle.HIGHEST_PROTOCOL)
def restore(self, backupfile):
archive = zipfile.ZipFile(backupfile, 'r', allowZip64=True)
self.cnx = self.get_connection()
self.cursor = self.cnx.cursor()
sequences, tables, table_chunks = self.read_metadata(archive, backupfile)
for seq in sequences:
self.logger.info('restoring sequence %s', seq)
self.read_sequence(archive, seq)
for table in tables:
self.logger.info('restoring table %s', table)
self.read_table(archive, table, sorted(table_chunks[table]))
self.cnx.close()
archive.close()
self.logger.info('done')
def read_metadata(self, archive, backupfile):
formatinfo = archive.read('format.txt')
self.logger.info('checking metadata')
if formatinfo.strip() != "1.0":
self.logger.critical('Unsupported format in archive: %s', formatinfo)
raise ValueError('Unknown format in %s: %s' % (backupfile, formatinfo))
tables = archive.read('tables.txt').splitlines()
sequences = archive.read('sequences.txt').splitlines()
file_versions = self._parse_versions(archive.read('versions.txt'))
versions = set(self._get_versions())
if file_versions != versions:
self.logger.critical('Unable to restore : versions do not match')
self.logger.critical('Expected:\n%s', '\n'.join('%s : %s' % (cube, ver)
for cube, ver in sorted(versions)))
self.logger.critical('Found:\n%s', '\n'.join('%s : %s' % (cube, ver)
for cube, ver in sorted(file_versions)))
raise ValueError('Unable to restore : versions do not match')
table_chunks = {}
for name in archive.namelist():
if not name.startswith('tables/'):
continue
filename = basename(name)
tablename, _ext = filename.rsplit('.', 1)
table_chunks.setdefault(tablename, []).append(name)
return sequences, tables, table_chunks
def read_sequence(self, archive, seq):
seqname, columns, rows = loads(archive.read('sequences/%s' % seq))
assert seqname == seq
assert len(rows) == 1
assert len(rows[0]) == 1
value = rows[0][0]
sql = self.dbhelper.sql_restart_sequence(seq, value)
self.cursor.execute(sql)
self.cnx.commit()
def read_table(self, archive, table, filenames):
merge_args = self._source.merge_args
self.cursor.execute('DELETE FROM %s' % table)
self.cnx.commit()
row_count = 0
for filename in filenames:
tablename, columns, rows = loads(archive.read(filename))
assert tablename == table
if not rows:
continue
insert = self.sql_generator.insert(table,
dict(zip(columns, rows[0])))
for row in rows:
self.cursor.execute(insert, merge_args(dict(zip(columns, row)), {}))
row_count += len(rows)
self.cnx.commit()
self.logger.info('inserted %d rows', row_count)
def _parse_versions(self, version_str):
versions = set()
for line in version_str.splitlines():
versions.add(tuple(line.split()))
return versions
def _get_versions(self):
version_sql = 'SELECT cw_pkey, cw_value FROM cw_CWProperty'
versions = []
self.cursor.execute(version_sql)
for pkey, value in self.cursor.fetchall():
if pkey.startswith(u'system.version'):
versions.append((pkey, value))
return versions