[multi-sources-removal] Drop entities.source column Since we remove federated multi-sources support, the same value ('system') is always stored in this column and so could be removed. Also, cleanup repository caches and a few api where the very same useless information could be removed. Closes #2919300, at last [jcr: restore sanity check of etype against schema in checkintegrity.has_eid]

sql('DROP TABLE "deleted_entities"')
sql('ALTER TABLE "entities" DROP COLUMN "mtime"')
sql('ALTER TABLE "entities" DROP COLUMN "source"')