[multi-sources-removal] Drop entities.source column Since we remove federated multi-sources support, the same value ('system') is always stored in this column and so could be removed. Also, cleanup repository caches and a few api where the very same useless information could be removed. Closes #2919300, at last [jcr: restore sanity check of etype against schema in checkintegrity.has_eid]

for table, column in [
        ('transactions', 'tx_time'),
        ('tx_entity_actions', 'tx_uuid'),
        ('tx_relation_actions', 'tx_uuid')]:
    repo.system_source.create_index(session, table, column)

commit()