cubicweb/server/checkintegrity.py
author Sylvain Thénault <sylvain.thenault@logilab.fr>
Thu, 29 Sep 2016 23:11:38 +0200
changeset 11760 efb8250e37fb
parent 11757 e845746b4d3c
child 11763 39df042f4ab4
permissions -rw-r--r--
Drop deprecated LDAP related script both are relying on the 'entities.source' column which has been dropped in 3.19. They have been written with the old ldapsource in mind, which has been dropped at that time.
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# copyright 2003-2016 LOGILAB S.A. (Paris, FRANCE), all rights reserved.
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# contact http://www.logilab.fr/ -- mailto:contact@logilab.fr
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#
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# This file is part of CubicWeb.
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#
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# CubicWeb is free software: you can redistribute it and/or modify it under the
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# terms of the GNU Lesser General Public License as published by the Free
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# Software Foundation, either version 2.1 of the License, or (at your option)
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# any later version.
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#
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# CubicWeb is distributed in the hope that it will be useful, but WITHOUT
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# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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# FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more
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# details.
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#
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# You should have received a copy of the GNU Lesser General Public License along
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# with CubicWeb.  If not, see <http://www.gnu.org/licenses/>.
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"""Integrity checking tool for instances:
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* integrity of a CubicWeb repository. Hum actually only the system database is
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  checked.
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"""
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from __future__ import print_function
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0
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__docformat__ = "restructuredtext en"
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import sys
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from datetime import datetime
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from logilab.common.shellutils import ProgressBar
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from yams.constraints import UniqueConstraint
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from cubicweb.toolsutils import underline_title
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from cubicweb.schema import PURE_VIRTUAL_RTYPES, VIRTUAL_RTYPES, UNIQUE_CONSTRAINTS
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from cubicweb.server.sqlutils import SQL_PREFIX
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from cubicweb.server.schema2sql import iter_unique_index_names, build_index_name
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def notify_fixed(fix):
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    if fix:
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        sys.stderr.write(' [FIXED]')
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    sys.stderr.write('\n')
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def has_eid(cnx, sqlcursor, eid, eids):
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    """return true if the eid is a valid eid"""
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    if eid in eids:
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        return eids[eid]
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    sqlcursor.execute('SELECT type FROM entities WHERE eid=%s' % eid)
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    try:
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        etype = sqlcursor.fetchone()[0]
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    except Exception:
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        eids[eid] = False
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        return False
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    if etype not in cnx.vreg.schema:
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        eids[eid] = False
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        return False
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    sqlcursor.execute('SELECT * FROM %s%s WHERE %seid=%s' % (SQL_PREFIX, etype,
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                                                             SQL_PREFIX, eid))
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    result = sqlcursor.fetchall()
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    if len(result) == 0:
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        eids[eid] = False
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        return False
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    elif len(result) > 1:
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        msg = ('  More than one entity with eid %s exists in source!\n'
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               '  WARNING : Unable to fix this, do it yourself!\n')
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        sys.stderr.write(msg % eid)
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    eids[eid] = True
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    return True
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# XXX move to yams?
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def etype_fti_containers(eschema, _done=None):
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    if _done is None:
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        _done = set()
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    _done.add(eschema)
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    containers = tuple(eschema.fulltext_containers())
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    if containers:
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        for rschema, target in containers:
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            if target == 'object':
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                targets = rschema.objects(eschema)
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            else:
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                targets = rschema.subjects(eschema)
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            for targeteschema in targets:
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                if targeteschema in _done:
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                    continue
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                _done.add(targeteschema)
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                for container in etype_fti_containers(targeteschema, _done):
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                    yield container
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    else:
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        yield eschema
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def reindex_entities(schema, cnx, withpb=True, etypes=None):
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    """reindex all entities in the repository"""
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    # deactivate modification_date hook since we don't want them
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    # to be updated due to the reindexation
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    repo = cnx.repo
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    dbhelper = repo.system_source.dbhelper
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    cursor = cnx.cnxset.cu
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    if not dbhelper.has_fti_table(cursor):
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        print('no text index table')
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        dbhelper.init_fti(cursor)
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    repo.system_source.do_fti = True  # ensure full-text indexation is activated
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    if etypes is None:
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        print('Reindexing entities')
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        etypes = set()
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        for eschema in schema.entities():
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            if eschema.final:
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                continue
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            indexable_attrs = tuple(eschema.indexable_attributes()) # generator
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            if not indexable_attrs:
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parents: 5693
diff changeset
   114
                continue
fabff2813ee4 [migration] schema should be accessed through .repo
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parents: 5693
diff changeset
   115
            for container in etype_fti_containers(eschema):
fabff2813ee4 [migration] schema should be accessed through .repo
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diff changeset
   116
                etypes.add(container)
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987086484876 [fti migration] test and fix reindexation of some specific entity types
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parents: 5850
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   117
        # clear fti table first
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   118
        cnx.system_sql('DELETE FROM %s' % dbhelper.fti_table)
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parents: 5850
diff changeset
   119
    else:
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parents: 10365
diff changeset
   120
        print('Reindexing entities of type %s' % \
7c23b7de2b8d [py3k] print function
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parents: 10365
diff changeset
   121
              ', '.join(sorted(str(e) for e in etypes)))
5954
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parents: 5850
diff changeset
   122
        # clear fti table first. Use subquery for sql compatibility
9574
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parents: 9543
diff changeset
   123
        cnx.system_sql("DELETE FROM %s WHERE EXISTS(SELECT 1 FROM ENTITIES "
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parents: 9543
diff changeset
   124
                       "WHERE eid=%s AND type IN (%s))" % (
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parents: 9543
diff changeset
   125
                           dbhelper.fti_table, dbhelper.fti_uid_attr,
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parents: 9543
diff changeset
   126
                           ','.join("'%s'" % etype for etype in etypes)))
4675
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parents: 4252
diff changeset
   127
    if withpb:
6112
913979c79244 [db-fti-index] simple fix fpr progressbar-related crash when etypes is None in reindex_entities()
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents: 5999
diff changeset
   128
        pb = ProgressBar(len(etypes) + 1)
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parents: 4252
diff changeset
   129
        pb.update()
0
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parents:
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   130
    # reindex entities by generating rql queries which set all indexable
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parents:
diff changeset
   131
    # attribute to their current value
4816
c02583cb80a9 repair stuff broken by fti handling changes
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parents: 4806
diff changeset
   132
    source = repo.system_source
0
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   133
    for eschema in etypes:
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diff changeset
   134
        etype_class = cnx.vreg['etypes'].etype_class(str(eschema))
10847
ce5403611cbe [fti] add cw_fti_index_rql_limit method
Julien Cristau <julien.cristau@logilab.fr>
parents: 10846
diff changeset
   135
        for rset in etype_class.cw_fti_index_rql_limit(cnx):
9574
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parents: 9543
diff changeset
   136
            source.fti_index_entities(cnx, rset.entities())
8450
11063635c4e4 [fti] allow usage of custom RQL to fetch entities to index (closes #2410509)
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents: 8447
diff changeset
   137
            # clear entity cache to avoid high memory consumption on big tables
9574
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parents: 9543
diff changeset
   138
            cnx.drop_entity_cache()
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parents: 4252
diff changeset
   139
        if withpb:
9233a8350420 [test] don't display progress bar when testing checkintegrity
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parents: 4252
diff changeset
   140
            pb.update()
9578
68049d53426c [fti] properly close the ProgressBar
Julien Cristau <julien.cristau@logilab.fr>
parents: 9577
diff changeset
   141
    if withpb:
68049d53426c [fti] properly close the ProgressBar
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diff changeset
   142
        pb.finish()
0
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parents:
diff changeset
   143
1802
d628defebc17 delete-trailing-whitespace + some copyright update
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents: 1398
diff changeset
   144
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diff changeset
   145
def check_schema(schema, cnx, eids, fix=1):
0
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parents:
diff changeset
   146
    """check serialized schema"""
10589
7c23b7de2b8d [py3k] print function
Samuel Trégouët <samuel.tregouet@logilab.fr>
parents: 10365
diff changeset
   147
    print('Checking serialized schema')
5338
3e5a256d17ba [db-check] fix duplicated schema constraint detection
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4835
diff changeset
   148
    rql = ('Any COUNT(X),RN,SN,ON,CTN GROUPBY RN,SN,ON,CTN ORDERBY 1 '
1398
5fe84a5f7035 rename internal entity types to have CW prefix instead of E
sylvain.thenault@logilab.fr
parents: 1263
diff changeset
   149
           'WHERE X is CWConstraint, R constrained_by X, '
5338
3e5a256d17ba [db-check] fix duplicated schema constraint detection
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4835
diff changeset
   150
           'R relation_type RT, RT name RN, R from_entity ST, ST name SN, '
3e5a256d17ba [db-check] fix duplicated schema constraint detection
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parents: 4835
diff changeset
   151
           'R to_entity OT, OT name ON, X cstrtype CT, CT name CTN')
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diff changeset
   152
    for count, rn, sn, on, cstrname in cnx.execute(rql):
0
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parents:
diff changeset
   153
        if count == 1:
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parents:
diff changeset
   154
            continue
10813
ab626726a70a [syncschema] don't arbitrarily remove constraints from the in-memory schema
Julien Cristau <julien.cristau@logilab.fr>
parents: 10663
diff changeset
   155
        if cstrname in UNIQUE_CONSTRAINTS:
10589
7c23b7de2b8d [py3k] print function
Samuel Trégouët <samuel.tregouet@logilab.fr>
parents: 10365
diff changeset
   156
            print("ERROR: got %s %r constraints on relation %s.%s.%s" % (
7c23b7de2b8d [py3k] print function
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parents: 10365
diff changeset
   157
                count, cstrname, sn, rn, on))
5523
4bf975c049a6 [db-check] RQLConstraint is not a 'unique' constraint
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 5424
diff changeset
   158
            if fix:
10589
7c23b7de2b8d [py3k] print function
Samuel Trégouët <samuel.tregouet@logilab.fr>
parents: 10365
diff changeset
   159
                print('dunno how to fix, do it yourself')
0
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parents:
diff changeset
   160
b97547f5f1fa Showtime !
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parents:
diff changeset
   161
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parents: 9574
diff changeset
   162
def check_text_index(schema, cnx, eids, fix=1):
0
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parents:
diff changeset
   163
    """check all entities registered in the text index"""
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parents: 10365
diff changeset
   164
    print('Checking text index')
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d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   165
    msg = '  Entity with eid %s exists in the text index but in no source (autofix will remove from text index)'
9577
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parents: 9574
diff changeset
   166
    cursor = cnx.system_sql('SELECT uid FROM appears;')
0
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   167
    for row in cursor.fetchall():
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parents:
diff changeset
   168
        eid = row[0]
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
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parents: 9574
diff changeset
   169
        if not has_eid(cnx, cursor, eid, eids):
7896
4c954e1e73ef [lint] remove uses of "print >> sys.stderr" (closes #1908571)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7815
diff changeset
   170
            sys.stderr.write(msg % eid)
0
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parents:
diff changeset
   171
            if fix:
9577
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parents: 9574
diff changeset
   172
                cnx.system_sql('DELETE FROM appears WHERE uid=%s;' % eid)
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 6889
diff changeset
   173
            notify_fixed(fix)
0
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   174
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   175
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
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parents: 9574
diff changeset
   176
def check_entities(schema, cnx, eids, fix=1):
0
b97547f5f1fa Showtime !
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parents:
diff changeset
   177
    """check all entities registered in the repo system table"""
10589
7c23b7de2b8d [py3k] print function
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parents: 10365
diff changeset
   178
    print('Checking entities system table')
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   179
    # system table but no source
9171
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   180
    msg = '  Entity %s with eid %s exists in the system table but in no source (autofix will delete the entity)'
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
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parents: 9574
diff changeset
   181
    cursor = cnx.system_sql('SELECT eid,type FROM entities;')
0
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parents:
diff changeset
   182
    for row in cursor.fetchall():
9171
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   183
        eid, etype = row
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
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parents: 9574
diff changeset
   184
        if not has_eid(cnx, cursor, eid, eids):
9171
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   185
            sys.stderr.write(msg % (etype, eid))
0
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parents:
diff changeset
   186
            if fix:
9577
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parents: 9574
diff changeset
   187
                cnx.system_sql('DELETE FROM entities WHERE eid=%s;' % eid)
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 6889
diff changeset
   188
            notify_fixed(fix)
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   189
    # source in entities, but no relation cw_source
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
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parents: 9574
diff changeset
   190
    # XXX this (get_versions) requires a second connection to the db when we already have one open
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   191
    applcwversion = cnx.repo.get_versions().get('cubicweb')
9468
39b7a91a3f4c [repo] pylint cleanup, mainly of imports, with a bit of style
Julien Cristau <julien.cristau@logilab.fr>
parents: 9463
diff changeset
   192
    if applcwversion >= (3, 13, 1): # entities.asource appeared in 3.13.1
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
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parents: 9574
diff changeset
   193
        cursor = cnx.system_sql('SELECT e.eid FROM entities as e, cw_CWSource as s '
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   194
                                    'WHERE s.cw_name=e.asource AND '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   195
                                    'NOT EXISTS(SELECT 1 FROM cw_source_relation as cs '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   196
                                    '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid) '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   197
                                    'ORDER BY e.eid')
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   198
        msg = ('  Entity with eid %s refers to source in entities table, '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   199
               'but is missing relation cw_source (autofix will create the relation)\n')
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   200
        for row in cursor.fetchall():
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   201
            sys.stderr.write(msg % row[0])
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   202
        if fix:
9577
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Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   203
            cnx.system_sql('INSERT INTO cw_source_relation (eid_from, eid_to) '
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   204
                               'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWSource as s '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   205
                               'WHERE s.cw_name=e.asource AND NOT EXISTS(SELECT 1 FROM cw_source_relation as cs '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   206
                               '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   207
            notify_fixed(True)
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   208
    # inconsistencies for 'is'
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   209
    msg = '  %s #%s is missing relation "is" (autofix will create the relation)\n'
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   210
    cursor = cnx.system_sql('SELECT e.type, e.eid FROM entities as e, cw_CWEType as s '
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   211
                                'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_relation as cs '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   212
                                '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid) '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   213
                                'ORDER BY e.eid')
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   214
    for row in cursor.fetchall():
10625
684dbf6722ef [server] fix checkintegrity with pyodbc
Julien Cristau <julien.cristau@logilab.fr>
parents: 10365
diff changeset
   215
        sys.stderr.write(msg % tuple(row))
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   216
    if fix:
9577
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parents: 9574
diff changeset
   217
        cnx.system_sql('INSERT INTO is_relation (eid_from, eid_to) '
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                           'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWEType as s '
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                           'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_relation as cs '
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                           '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
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        notify_fixed(True)
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    # inconsistencies for 'is_instance_of'
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    msg = '  %s #%s is missing relation "is_instance_of" (autofix will create the relation)\n'
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    cursor = cnx.system_sql('SELECT e.type, e.eid FROM entities as e, cw_CWEType as s '
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                                'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_instance_of_relation as cs '
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                                '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid) '
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                                'ORDER BY e.eid')
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    for row in cursor.fetchall():
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        sys.stderr.write(msg % tuple(row))
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    if fix:
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        cnx.system_sql('INSERT INTO is_instance_of_relation (eid_from, eid_to) '
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                           'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWEType as s '
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                           'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_instance_of_relation as cs '
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                           '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
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        notify_fixed(True)
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    print('Checking entities tables')
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    msg = '  Entity with eid %s exists in the %s table but not in the system table (autofix will delete the entity)'
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    for eschema in schema.entities():
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        if eschema.final:
0
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            continue
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        table = SQL_PREFIX + eschema.type
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        column = SQL_PREFIX +  'eid'
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        cursor = cnx.system_sql('SELECT %s FROM %s;' % (column, table))
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        for row in cursor.fetchall():
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            eid = row[0]
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            # eids is full since we have fetched everything from the entities table,
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            # no need to call has_eid
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            if not eid in eids or not eids[eid]:
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                sys.stderr.write(msg % (eid, eschema.type))
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                if fix:
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                    cnx.system_sql('DELETE FROM %s WHERE %s=%s;' % (table, column, eid))
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                notify_fixed(fix)
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0
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def bad_related_msg(rtype, target, eid, fix):
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    msg = '  A relation %s with %s eid %s exists but no such entity in sources'
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    sys.stderr.write(msg % (rtype, target, eid))
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    notify_fixed(fix)
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5a857bba1b79 [c-c] Add a command to check database index
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def bad_inlined_msg(rtype, parent_eid, eid, fix):
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    msg = ('  An inlined relation %s from %s to %s exists but the latter '
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           'entity does not exist')
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    sys.stderr.write(msg % (rtype, parent_eid, eid))
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    notify_fixed(fix)
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   267
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def check_relations(schema, cnx, eids, fix=1):
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    """check that eids referenced by relations are registered in the repo system
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    table
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    """
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    print('Checking relations')
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    for rschema in schema.relations():
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        if rschema.final or rschema.type in PURE_VIRTUAL_RTYPES:
0
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            continue
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        if rschema.inlined:
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            for subjtype in rschema.subjects():
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                table = SQL_PREFIX + str(subjtype)
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                column = SQL_PREFIX +  str(rschema)
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                sql = 'SELECT cw_eid,%s FROM %s WHERE %s IS NOT NULL;' % (
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                    column, table, column)
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                cursor = cnx.system_sql(sql)
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                for row in cursor.fetchall():
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                    parent_eid, eid = row
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                    if not has_eid(cnx, cursor, eid, eids):
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                        bad_inlined_msg(rschema, parent_eid, eid, fix)
0
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                        if fix:
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d5bd1b659ce8 [db-check] fix sql to fix bad eid referenced by inlined relation
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diff changeset
   288
                            sql = 'UPDATE %s SET %s=NULL WHERE %s=%s;' % (
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                                table, column, column, eid)
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                            cnx.system_sql(sql)
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            continue
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diff changeset
   292
        try:
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   293
            cursor = cnx.system_sql('SELECT eid_from FROM %s_relation;' % rschema)
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358d8bed9626 [toward-py3k] rewrite to "except AnException as exc:" (part of #2711624)
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   294
        except Exception as ex:
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   295
            # usually because table doesn't exist
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   296
            print('ERROR', ex)
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   297
            continue
0
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        for row in cursor.fetchall():
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            eid = row[0]
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            if not has_eid(cnx, cursor, eid, eids):
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                bad_related_msg(rschema, 'subject', eid, fix)
0
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   302
                if fix:
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diff changeset
   303
                    sql = 'DELETE FROM %s_relation WHERE eid_from=%s;' % (
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   304
                        rschema, eid)
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diff changeset
   305
                    cnx.system_sql(sql)
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diff changeset
   306
        cursor = cnx.system_sql('SELECT eid_to FROM %s_relation;' % rschema)
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        for row in cursor.fetchall():
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            eid = row[0]
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diff changeset
   309
            if not has_eid(cnx, cursor, eid, eids):
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diff changeset
   310
                bad_related_msg(rschema, 'object', eid, fix)
0
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                if fix:
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diff changeset
   312
                    sql = 'DELETE FROM %s_relation WHERE eid_to=%s;' % (
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   313
                        rschema, eid)
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diff changeset
   314
                    cnx.system_sql(sql)
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diff changeset
   315
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diff changeset
   316
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   317
def check_mandatory_relations(schema, cnx, eids, fix=1):
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
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diff changeset
   318
    """check entities missing some mandatory relation"""
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diff changeset
   319
    print('Checking mandatory relations')
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diff changeset
   320
    msg = '%s #%s is missing mandatory %s relation %s (autofix will delete the entity)'
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63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
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parents: 7035
diff changeset
   321
    for rschema in schema.relations():
8527
6151b0199bc1 [c-c db-check] don't skip is/is_instance_of mandatory relation to avoid telling two opposite messages when the relation is missing. Closes #2465659
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 8450
diff changeset
   322
        if rschema.final or rschema in PURE_VIRTUAL_RTYPES or rschema in ('is', 'is_instance_of'):
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   323
            continue
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   324
        smandatory = set()
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   325
        omandatory = set()
10663
54b8a1f249fb [py3k] dict.itervalues → dict.values
Rémi Cardona <remi.cardona@logilab.fr>
parents: 10651
diff changeset
   326
        for rdef in rschema.rdefs.values():
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   327
            if rdef.cardinality[0] in '1+':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   328
                smandatory.add(rdef.subject)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   329
            if rdef.cardinality[1] in '1+':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   330
                omandatory.add(rdef.object)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   331
        for role, etypes in (('subject', smandatory), ('object', omandatory)):
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   332
            for etype in etypes:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   333
                if role == 'subject':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   334
                    rql = 'Any X WHERE NOT X %s Y, X is %s' % (rschema, etype)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   335
                else:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   336
                    rql = 'Any X WHERE NOT Y %s X, X is %s' % (rschema, etype)
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   337
                for entity in cnx.execute(rql).entities():
8900
010a59e12d89 use cw_etype instead of __regid__
Pierre-Yves David <pierre-yves.david@logilab.fr>
parents: 8696
diff changeset
   338
                    sys.stderr.write(msg % (entity.cw_etype, entity.eid, role, rschema))
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   339
                    if fix:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   340
                        #if entity.cw_describe()['source']['uri'] == 'system': XXX
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   341
                        entity.cw_delete() # XXX this is BRUTAL!
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   342
                    notify_fixed(fix)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   343
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   344
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   345
def check_mandatory_attributes(schema, cnx, eids, fix=1):
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   346
    """check for entities stored in the system source missing some mandatory
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   347
    attribute
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   348
    """
10589
7c23b7de2b8d [py3k] print function
Samuel Trégouët <samuel.tregouet@logilab.fr>
parents: 10365
diff changeset
   349
    print('Checking mandatory attributes')
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   350
    msg = '%s #%s is missing mandatory attribute %s (autofix will delete the entity)'
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   351
    for rschema in schema.relations():
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   352
        if not rschema.final or rschema in VIRTUAL_RTYPES:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   353
            continue
10663
54b8a1f249fb [py3k] dict.itervalues → dict.values
Rémi Cardona <remi.cardona@logilab.fr>
parents: 10651
diff changeset
   354
        for rdef in rschema.rdefs.values():
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   355
            if rdef.cardinality[0] in '1+':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   356
                rql = 'Any X WHERE X %s NULL, X is %s, X cw_source S, S name "system"' % (
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   357
                    rschema, rdef.subject)
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   358
                for entity in cnx.execute(rql).entities():
8900
010a59e12d89 use cw_etype instead of __regid__
Pierre-Yves David <pierre-yves.david@logilab.fr>
parents: 8696
diff changeset
   359
                    sys.stderr.write(msg % (entity.cw_etype, entity.eid, rschema))
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   360
                    if fix:
7682
07b592a62be3 [c-c db-check] drop some deprecation warning
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7473
diff changeset
   361
                        entity.cw_delete()
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   362
                    notify_fixed(fix)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   363
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   364
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   365
def check_metadata(schema, cnx, eids, fix=1):
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   366
    """check entities has required metadata
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   367
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   368
    FIXME: rewrite using RQL queries ?
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   369
    """
10589
7c23b7de2b8d [py3k] print function
Samuel Trégouët <samuel.tregouet@logilab.fr>
parents: 10365
diff changeset
   370
    print('Checking metadata')
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   371
    cursor = cnx.system_sql("SELECT DISTINCT type FROM entities;")
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   372
    eidcolumn = SQL_PREFIX + 'eid'
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   373
    msg = '  %s with eid %s has no %s (autofix will set it to now)'
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   374
    for etype, in cursor.fetchall():
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   375
        if etype not in cnx.vreg.schema:
9171
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   376
            sys.stderr.write('entities table references unknown type %s\n' %
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   377
                             etype)
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   378
            if fix:
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   379
                cnx.system_sql("DELETE FROM entities WHERE type = %(type)s",
9171
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   380
                                   {'type': etype})
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   381
            continue
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   382
        table = SQL_PREFIX + etype
11033
63d860a14a17 [schema] Use TZDatetime for creation_date and modification_date
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 10847
diff changeset
   383
        for rel, default in ( ('creation_date', datetime.utcnow()),
63d860a14a17 [schema] Use TZDatetime for creation_date and modification_date
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 10847
diff changeset
   384
                              ('modification_date', datetime.utcnow()), ):
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   385
            column = SQL_PREFIX + rel
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   386
            cursor = cnx.system_sql("SELECT %s FROM %s WHERE %s is NULL"
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   387
                                        % (eidcolumn, table, column))
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   388
            for eid, in cursor.fetchall():
7896
4c954e1e73ef [lint] remove uses of "print >> sys.stderr" (closes #1908571)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7815
diff changeset
   389
                sys.stderr.write(msg % (etype, eid, rel))
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   390
                if fix:
9577
c52441e4a3d7 [serverctl] use repoapi for db-check, add-source, rebuild-fti commands
Julien Cristau <julien.cristau@logilab.fr>
parents: 9574
diff changeset
   391
                    cnx.system_sql("UPDATE %s SET %s=%%(v)s WHERE %s=%s ;"
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   392
                                       % (table, column, eidcolumn, eid),
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   393
                                       {'v': default})
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 6889
diff changeset
   394
                notify_fixed(fix)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   395
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   396
4675
9233a8350420 [test] don't display progress bar when testing checkintegrity
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4252
diff changeset
   397
def check(repo, cnx, checks, reindex, fix, withpb=True):
2476
1294a6bdf3bf application -> instance where it makes sense
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 2248
diff changeset
   398
    """check integrity of instance's repository,
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   399
    using given user and password to locally connect to the repository
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   400
    (no running cubicweb server needed)
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   401
    """
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   402
    # yo, launch checks
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   403
    if checks:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   404
        eids_cache = {}
9797
4e640ab62f51 [tests/checkintegrity] use the new connection api
Aurelien Campeas <aurelien.campeas@logilab.fr>
parents: 9578
diff changeset
   405
        with cnx.security_enabled(read=False, write=False): # ensure no read security
4835
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   406
            for check in checks:
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   407
                check_func = globals()['check_%s' % check]
10365
21461f80f348 [connection] remove ensure_cnx_set context manager uses
Aurelien Campeas <aurelien.campeas@logilab.fr>
parents: 9797
diff changeset
   408
                check_func(repo.schema, cnx, eids_cache, fix=fix)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   409
        if fix:
9797
4e640ab62f51 [tests/checkintegrity] use the new connection api
Aurelien Campeas <aurelien.campeas@logilab.fr>
parents: 9578
diff changeset
   410
            cnx.commit()
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   411
        else:
10589
7c23b7de2b8d [py3k] print function
Samuel Trégouët <samuel.tregouet@logilab.fr>
parents: 10365
diff changeset
   412
            print()
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   413
        if not fix:
10589
7c23b7de2b8d [py3k] print function
Samuel Trégouët <samuel.tregouet@logilab.fr>
parents: 10365
diff changeset
   414
            print('WARNING: Diagnostic run, nothing has been corrected')
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   415
    if reindex:
9797
4e640ab62f51 [tests/checkintegrity] use the new connection api
Aurelien Campeas <aurelien.campeas@logilab.fr>
parents: 9578
diff changeset
   416
        cnx.rollback()
10365
21461f80f348 [connection] remove ensure_cnx_set context manager uses
Aurelien Campeas <aurelien.campeas@logilab.fr>
parents: 9797
diff changeset
   417
        reindex_entities(repo.schema, cnx, withpb=withpb)
9797
4e640ab62f51 [tests/checkintegrity] use the new connection api
Aurelien Campeas <aurelien.campeas@logilab.fr>
parents: 9578
diff changeset
   418
        cnx.commit()
11361
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   419
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   420
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   421
SYSTEM_INDICES = {
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   422
    # see cw/server/sources/native.py
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   423
    'entities_type_idx': ('entities', 'type'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   424
    'entities_extid_idx': ('entities', 'extid'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   425
    'transactions_tx_time_idx': ('transactions', 'tx_time'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   426
    'transactions_tx_user_idx': ('transactions', 'tx_user'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   427
    'tx_entity_actions_txa_action_idx': ('tx_entity_actions', 'txa_action'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   428
    'tx_entity_actions_txa_public_idx': ('tx_entity_actions', 'txa_public'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   429
    'tx_entity_actions_eid_idx': ('tx_entity_actions', 'txa_eid'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   430
    'tx_entity_actions_etype_idx': ('tx_entity_actions', 'txa_etype'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   431
    'tx_entity_actions_tx_uuid_idx': ('tx_entity_actions', 'tx_uuid'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   432
    'tx_relation_actions_txa_action_idx': ('tx_relation_actions', 'txa_action'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   433
    'tx_relation_actions_txa_public_idx': ('tx_relation_actions', 'txa_public'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   434
    'tx_relation_actions_eid_from_idx': ('tx_relation_actions', 'eid_from'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   435
    'tx_relation_actions_eid_to_idx': ('tx_relation_actions', 'eid_to'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   436
    'tx_relation_actions_tx_uuid_idx': ('tx_relation_actions', 'tx_uuid'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   437
}
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   438
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   439
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   440
def check_indexes(cnx):
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   441
    """Check indexes of a system database: output missing expected indexes as well as unexpected ones.
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   442
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   443
    Return 0 if there is no differences, else 1.
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   444
    """
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   445
    source = cnx.repo.system_source
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   446
    dbh = source.dbhelper
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   447
    schema = cnx.repo.schema
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   448
    schema_indices = SYSTEM_INDICES.copy()
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   449
    if source.dbdriver == 'postgres':
11757
e845746b4d3c [sources] Drop 'moved_entities' table handling
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11361
diff changeset
   450
        schema_indices.update({'appears_words_idx': ('appears', 'words')})
11361
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   451
        index_filter = lambda idx: not (idx.startswith('pg_') or idx.endswith('_pkey'))
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   452
    else:
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   453
        schema_indices.update({'appears_uid': ('appears', 'uid'),
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   454
                               'appears_word_id': ('appears', 'word_id')})
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   455
        index_filter = lambda idx: not idx.startswith('sqlite_')
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   456
    db_indices = set(idx for idx in dbh.list_indices(cnx.cnxset.cu)
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   457
                     if index_filter(idx))
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   458
    for rschema in schema.relations():
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   459
        if rschema.rule or rschema in PURE_VIRTUAL_RTYPES:
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   460
            continue  # computed relation
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   461
        if rschema.final or rschema.inlined:
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   462
            for rdef in rschema.rdefs.values():
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   463
                table = 'cw_{0}'.format(rdef.subject)
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   464
                column = 'cw_{0}'.format(rdef.rtype)
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   465
                if any(isinstance(cstr, UniqueConstraint) for cstr in rdef.constraints):
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   466
                    schema_indices[dbh._index_name(table, column, unique=True)] = (
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   467
                        table, [column])
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   468
                if rschema.inlined or rdef.indexed:
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   469
                    schema_indices[dbh._index_name(table, column)] = (table, [column])
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   470
        else:
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   471
            table = '{0}_relation'.format(rschema)
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   472
            if source.dbdriver == 'postgres':
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   473
                # index built after the primary key constraint
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   474
                schema_indices[build_index_name(table, ['eid_from', 'eid_to'], 'key_')] = (
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   475
                    table, ['eid_from', 'eid_to'])
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   476
            schema_indices[build_index_name(table, ['eid_from'], 'idx_')] = (
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   477
                table, ['eid_from'])
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   478
            schema_indices[build_index_name(table, ['eid_to'], 'idx_')] = (
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   479
                table, ['eid_to'])
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   480
    for eschema in schema.entities():
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   481
        if eschema.final:
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   482
            continue
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   483
        table = 'cw_{0}'.format(eschema)
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   484
        for columns, index_name in iter_unique_index_names(eschema):
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   485
            schema_indices[index_name] = (table, columns)
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   486
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   487
    missing_indices = set(schema_indices) - db_indices
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   488
    if missing_indices:
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   489
        print(underline_title('Missing indices'))
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   490
        print('index expected by the schema but not found in the database:\n')
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   491
        missing = ['{0} ON {1[0]} {1[1]}'.format(idx, schema_indices[idx])
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   492
                   for idx in missing_indices]
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   493
        print('\n'.join(sorted(missing)))
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   494
        print()
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   495
        status = 1
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   496
    additional_indices = db_indices - set(schema_indices)
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   497
    if additional_indices:
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   498
        print(underline_title('Additional indices'))
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   499
        print('index in the database but not expected by the schema:\n')
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   500
        print('\n'.join(sorted(additional_indices)))
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   501
        print()
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   502
        status = 1
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   503
    if not (missing_indices or additional_indices):
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   504
        print('Everything is Ok')
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   505
        status = 0
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   506
5a857bba1b79 [c-c] Add a command to check database index
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 11057
diff changeset
   507
    return status