server/checkintegrity.py
author Sylvain Thénault <sylvain.thenault@logilab.fr>
Thu, 22 Sep 2011 16:12:23 +0200
changeset 7827 9bbf83f68bcc
parent 7687 4f5ab60e71cc
child 7815 2a164a9cf81c
permissions -rw-r--r--
[entity] upgrade fetch_[unrelated_]order to benefit from changes introduced in 3.14 (closes #1942758) of rql generation parts of the ORM now based on rql syntax tree. This allows more powerful and flexible sort control by giving them the syntax tree instead of manipulating string. Also: * prefix new methods by 'cw_' * fix cases that currently crash in 3.14 due to the refactoring
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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# copyright 2003-2011 LOGILAB S.A. (Paris, FRANCE), all rights reserved.
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# contact http://www.logilab.fr/ -- mailto:contact@logilab.fr
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#
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# This file is part of CubicWeb.
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#
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# CubicWeb is free software: you can redistribute it and/or modify it under the
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# terms of the GNU Lesser General Public License as published by the Free
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# Software Foundation, either version 2.1 of the License, or (at your option)
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# any later version.
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#
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# CubicWeb is distributed in the hope that it will be useful, but WITHOUT
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# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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# FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more
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# details.
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#
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# You should have received a copy of the GNU Lesser General Public License along
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# with CubicWeb.  If not, see <http://www.gnu.org/licenses/>.
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"""Integrity checking tool for instances:
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* integrity of a CubicWeb repository. Hum actually only the system database is
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  checked.
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"""
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from __future__ import with_statement
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__docformat__ = "restructuredtext en"
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import sys
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from datetime import datetime
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from logilab.common.shellutils import ProgressBar
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from cubicweb.schema import PURE_VIRTUAL_RTYPES, VIRTUAL_RTYPES
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from cubicweb.server.sqlutils import SQL_PREFIX
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from cubicweb.server.session import security_enabled
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def notify_fixed(fix):
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    if fix:
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        print >> sys.stderr, ' [FIXED]'
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    else:
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        print >> sys.stderr
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def has_eid(session, sqlcursor, eid, eids):
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    """return true if the eid is a valid eid"""
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    if eid in eids:
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        return eids[eid]
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    sqlcursor.execute('SELECT type, source FROM entities WHERE eid=%s' % eid)
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    try:
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        etype, source = sqlcursor.fetchone()
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    except:
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        eids[eid] = False
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        return False
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    if source and source != 'system':
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        try:
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            # insert eid *and* etype to attempt checking entity has not been
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            # replaced by another subsquently to a restore of an old dump
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            if session.execute('Any X WHERE X is %s, X eid %%(x)s' % etype,
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                               {'x': eid}):
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                eids[eid] = True
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                return True
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        except: # TypeResolverError, Unauthorized...
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            pass
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        eids[eid] = False
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        return False
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    sqlcursor.execute('SELECT * FROM %s%s WHERE %seid=%s' % (SQL_PREFIX, etype,
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                                                             SQL_PREFIX, eid))
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    result = sqlcursor.fetchall()
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    if len(result) == 0:
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        eids[eid] = False
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        return False
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    elif len(result) > 1:
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        msg = '  More than one entity with eid %s exists in source !'
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        print >> sys.stderr, msg % eid
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        print >> sys.stderr, '  WARNING : Unable to fix this, do it yourself !'
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    eids[eid] = True
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    return True
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# XXX move to yams?
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def etype_fti_containers(eschema, _done=None):
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    if _done is None:
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        _done = set()
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    _done.add(eschema)
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    containers = tuple(eschema.fulltext_containers())
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    if containers:
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        for rschema, target in containers:
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            if target == 'object':
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                targets = rschema.objects(eschema)
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            else:
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                targets = rschema.subjects(eschema)
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            for targeteschema in targets:
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                if targeteschema in _done:
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                    continue
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                _done.add(targeteschema)
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                for container in etype_fti_containers(targeteschema, _done):
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                    yield container
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    else:
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        yield eschema
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def reindex_entities(schema, session, withpb=True, etypes=None):
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    """reindex all entities in the repository"""
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    # deactivate modification_date hook since we don't want them
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    # to be updated due to the reindexation
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    repo = session.repo
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    cursor = session.cnxset['system']
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    dbhelper = session.repo.system_source.dbhelper
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    if not dbhelper.has_fti_table(cursor):
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        print 'no text index table'
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        dbhelper.init_fti(cursor)
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    repo.system_source.do_fti = True  # ensure full-text indexation is activated
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    if etypes is None:
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        print 'Reindexing entities'
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        etypes = set()
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   113
        for eschema in schema.entities():
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parents: 5693
diff changeset
   114
            if eschema.final:
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parents: 5693
diff changeset
   115
                continue
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diff changeset
   116
            indexable_attrs = tuple(eschema.indexable_attributes()) # generator
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parents: 5693
diff changeset
   117
            if not indexable_attrs:
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parents: 5693
diff changeset
   118
                continue
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diff changeset
   119
            for container in etype_fti_containers(eschema):
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parents: 5693
diff changeset
   120
                etypes.add(container)
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987086484876 [fti migration] test and fix reindexation of some specific entity types
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parents: 5850
diff changeset
   121
        # clear fti table first
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parents: 5850
diff changeset
   122
        session.system_sql('DELETE FROM %s' % dbhelper.fti_table)
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parents: 5850
diff changeset
   123
    else:
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parents: 5850
diff changeset
   124
        print 'Reindexing entities of type %s' % \
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diff changeset
   125
              ', '.join(sorted(str(e) for e in etypes))
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parents: 5850
diff changeset
   126
        # clear fti table first. Use subquery for sql compatibility
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parents: 5850
diff changeset
   127
        session.system_sql("DELETE FROM %s WHERE EXISTS(SELECT 1 FROM ENTITIES "
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diff changeset
   128
                           "WHERE eid=%s AND type IN (%s))" % (
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parents: 5850
diff changeset
   129
                               dbhelper.fti_table, dbhelper.fti_uid_attr,
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diff changeset
   130
                               ','.join("'%s'" % etype for etype in etypes)))
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9233a8350420 [test] don't display progress bar when testing checkintegrity
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parents: 4252
diff changeset
   131
    if withpb:
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913979c79244 [db-fti-index] simple fix fpr progressbar-related crash when etypes is None in reindex_entities()
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parents: 5999
diff changeset
   132
        pb = ProgressBar(len(etypes) + 1)
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diff changeset
   133
        pb.update()
0
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   134
    # reindex entities by generating rql queries which set all indexable
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diff changeset
   135
    # attribute to their current value
4816
c02583cb80a9 repair stuff broken by fti handling changes
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parents: 4806
diff changeset
   136
    source = repo.system_source
0
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diff changeset
   137
    for eschema in etypes:
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37668bf302f5 improve massive deletion performance
Alexandre Fayolle <alexandre.fayolle@logilab.fr>
parents: 6624
diff changeset
   138
        rset = session.execute('Any X WHERE X is %s' % eschema)
37668bf302f5 improve massive deletion performance
Alexandre Fayolle <alexandre.fayolle@logilab.fr>
parents: 6624
diff changeset
   139
        source.fti_index_entities(session, rset.entities())
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9233a8350420 [test] don't display progress bar when testing checkintegrity
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parents: 4252
diff changeset
   140
        if withpb:
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parents: 4252
diff changeset
   141
            pb.update()
0
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parents:
diff changeset
   142
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parents: 1398
diff changeset
   143
380
06e7f2932afe db-check fixes
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parents: 0
diff changeset
   144
def check_schema(schema, session, eids, fix=1):
0
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   145
    """check serialized schema"""
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diff changeset
   146
    print 'Checking serialized schema'
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diff changeset
   147
    unique_constraints = ('SizeConstraint', 'FormatConstraint',
5523
4bf975c049a6 [db-check] RQLConstraint is not a 'unique' constraint
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parents: 5424
diff changeset
   148
                          'VocabularyConstraint',
0
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   149
                          'RQLVocabularyConstraint')
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3e5a256d17ba [db-check] fix duplicated schema constraint detection
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4835
diff changeset
   150
    rql = ('Any COUNT(X),RN,SN,ON,CTN GROUPBY RN,SN,ON,CTN ORDERBY 1 '
1398
5fe84a5f7035 rename internal entity types to have CW prefix instead of E
sylvain.thenault@logilab.fr
parents: 1263
diff changeset
   151
           'WHERE X is CWConstraint, R constrained_by X, '
5338
3e5a256d17ba [db-check] fix duplicated schema constraint detection
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4835
diff changeset
   152
           'R relation_type RT, RT name RN, R from_entity ST, ST name SN, '
3e5a256d17ba [db-check] fix duplicated schema constraint detection
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parents: 4835
diff changeset
   153
           'R to_entity OT, OT name ON, X cstrtype CT, CT name CTN')
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parents: 4835
diff changeset
   154
    for count, rn, sn, on, cstrname in session.execute(rql):
0
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parents:
diff changeset
   155
        if count == 1:
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parents:
diff changeset
   156
            continue
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parents:
diff changeset
   157
        if cstrname in unique_constraints:
5338
3e5a256d17ba [db-check] fix duplicated schema constraint detection
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parents: 4835
diff changeset
   158
            print "ERROR: got %s %r constraints on relation %s.%s.%s" % (
3e5a256d17ba [db-check] fix duplicated schema constraint detection
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parents: 4835
diff changeset
   159
                count, cstrname, sn, rn, on)
5523
4bf975c049a6 [db-check] RQLConstraint is not a 'unique' constraint
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 5424
diff changeset
   160
            if fix:
4bf975c049a6 [db-check] RQLConstraint is not a 'unique' constraint
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parents: 5424
diff changeset
   161
                print 'dunno how to fix, do it yourself'
0
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parents:
diff changeset
   162
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parents:
diff changeset
   163
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parents: 1398
diff changeset
   164
0
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parents:
diff changeset
   165
def check_text_index(schema, session, eids, fix=1):
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parents:
diff changeset
   166
    """check all entities registered in the text index"""
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parents:
diff changeset
   167
    print 'Checking text index'
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parents:
diff changeset
   168
    cursor = session.system_sql('SELECT uid FROM appears;')
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parents:
diff changeset
   169
    for row in cursor.fetchall():
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diff changeset
   170
        eid = row[0]
5339
b83327846450 [db-check] fix unexistent multisource entity detection
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 5338
diff changeset
   171
        if not has_eid(session, cursor, eid, eids):
0
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parents:
diff changeset
   172
            msg = '  Entity with eid %s exists in the text index but in no source'
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parents:
diff changeset
   173
            print >> sys.stderr, msg % eid,
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parents:
diff changeset
   174
            if fix:
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diff changeset
   175
                session.system_sql('DELETE FROM appears WHERE uid=%s;' % eid)
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8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
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parents: 6889
diff changeset
   176
            notify_fixed(fix)
0
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parents:
diff changeset
   177
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parents:
diff changeset
   178
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diff changeset
   179
def check_entities(schema, session, eids, fix=1):
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parents:
diff changeset
   180
    """check all entities registered in the repo system table"""
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parents:
diff changeset
   181
    print 'Checking entities system table'
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parents:
diff changeset
   182
    cursor = session.system_sql('SELECT eid FROM entities;')
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parents:
diff changeset
   183
    for row in cursor.fetchall():
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diff changeset
   184
        eid = row[0]
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b83327846450 [db-check] fix unexistent multisource entity detection
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parents: 5338
diff changeset
   185
        if not has_eid(session, cursor, eid, eids):
0
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parents:
diff changeset
   186
            msg = '  Entity with eid %s exists in the system table but in no source'
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parents:
diff changeset
   187
            print >> sys.stderr, msg % eid,
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parents:
diff changeset
   188
            if fix:
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diff changeset
   189
                session.system_sql('DELETE FROM entities WHERE eid=%s;' % eid)
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 6889
diff changeset
   190
            notify_fixed(fix)
7687
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   191
    session.system_sql('INSERT INTO cw_source_relation (eid_from, eid_to) '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   192
                       'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWSource as s '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   193
                       'WHERE s.cw_name=e.asource AND NOT EXISTS(SELECT 1 FROM cw_source_relation as cs '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   194
                       '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   195
    session.system_sql('INSERT INTO is_relation (eid_from, eid_to) '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   196
                       'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWEType as s '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   197
                       'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_relation as cs '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   198
                       '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   199
    session.system_sql('INSERT INTO is_instance_of_relation (eid_from, eid_to) '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   200
                       'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWEType as s '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   201
                       'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_instance_of_relation as cs '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   202
                       '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
0
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parents:
diff changeset
   203
    print 'Checking entities tables'
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parents:
diff changeset
   204
    for eschema in schema.entities():
3689
deb13e88e037 follow yams 0.25 api changes to improve performance
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 3374
diff changeset
   205
        if eschema.final:
0
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diff changeset
   206
            continue
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   207
        table = SQL_PREFIX + eschema.type
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   208
        column = SQL_PREFIX +  'eid'
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   209
        cursor = session.system_sql('SELECT %s FROM %s;' % (column, table))
0
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parents:
diff changeset
   210
        for row in cursor.fetchall():
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parents:
diff changeset
   211
            eid = row[0]
5341
0de53140bd29 [db-check] cleanup
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 5340
diff changeset
   212
            # eids is full since we have fetched everything from the entities table,
0
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parents:
diff changeset
   213
            # no need to call has_eid
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diff changeset
   214
            if not eid in eids or not eids[eid]:
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parents:
diff changeset
   215
                msg = '  Entity with eid %s exists in the %s table but not in the system table'
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parents:
diff changeset
   216
                print >> sys.stderr, msg % (eid, eschema.type),
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parents:
diff changeset
   217
                if fix:
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af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   218
                    session.system_sql('DELETE FROM %s WHERE %s=%s;' % (table, column, eid))
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
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parents: 6889
diff changeset
   219
                notify_fixed(fix)
1802
d628defebc17 delete-trailing-whitespace + some copyright update
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents: 1398
diff changeset
   220
d628defebc17 delete-trailing-whitespace + some copyright update
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents: 1398
diff changeset
   221
0
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
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   222
def bad_related_msg(rtype, target, eid, fix):
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    msg = '  A relation %s with %s eid %s exists but no such entity in sources'
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    print >> sys.stderr, msg % (rtype, target, eid),
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    notify_fixed(fix)
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0
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def check_relations(schema, session, eids, fix=1):
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    """check that eids referenced by relations are registered in the repo system
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    table
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    """
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    print 'Checking relations'
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    for rschema in schema.relations():
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        if rschema.final or rschema in PURE_VIRTUAL_RTYPES:
0
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            continue
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        if rschema.inlined:
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            for subjtype in rschema.subjects():
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                table = SQL_PREFIX + str(subjtype)
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                column = SQL_PREFIX +  str(rschema)
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                sql = 'SELECT %s FROM %s WHERE %s IS NOT NULL;' % (
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                    column, table, column)
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                cursor = session.system_sql(sql)
0
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                for row in cursor.fetchall():
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                    eid = row[0]
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                    if not has_eid(session, cursor, eid, eids):
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                        bad_related_msg(rschema, 'object', eid, fix)
0
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                        if fix:
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                            sql = 'UPDATE %s SET %s=NULL WHERE %s=%s;' % (
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                                table, column, column, eid)
381
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                            session.system_sql(sql)
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            continue
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        try:
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            cursor = session.system_sql('SELECT eid_from FROM %s_relation;' % rschema)
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        except Exception, ex:
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            # usually because table doesn't exist
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            print 'ERROR', ex
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            continue
0
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        for row in cursor.fetchall():
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            eid = row[0]
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            if not has_eid(session, cursor, eid, eids):
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                bad_related_msg(rschema, 'subject', eid, fix)
0
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                if fix:
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                    sql = 'DELETE FROM %s_relation WHERE eid_from=%s;' % (
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                        rschema, eid)
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                    session.system_sql(sql)
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        cursor = session.system_sql('SELECT eid_to FROM %s_relation;' % rschema)
0
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        for row in cursor.fetchall():
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            eid = row[0]
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            if not has_eid(session, cursor, eid, eids):
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                bad_related_msg(rschema, 'object', eid, fix)
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                if fix:
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                    sql = 'DELETE FROM %s_relation WHERE eid_to=%s;' % (
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                        rschema, eid)
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                    session.system_sql(sql)
0
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def check_mandatory_relations(schema, session, eids, fix=1):
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    """check entities missing some mandatory relation"""
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    print 'Checking mandatory relations'
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    for rschema in schema.relations():
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        if rschema.final or rschema in PURE_VIRTUAL_RTYPES:
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            continue
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        smandatory = set()
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        omandatory = set()
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        for rdef in rschema.rdefs.values():
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            if rdef.cardinality[0] in '1+':
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                smandatory.add(rdef.subject)
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            if rdef.cardinality[1] in '1+':
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                omandatory.add(rdef.object)
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        for role, etypes in (('subject', smandatory), ('object', omandatory)):
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            for etype in etypes:
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                if role == 'subject':
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                    rql = 'Any X WHERE NOT X %s Y, X is %s' % (rschema, etype)
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                else:
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                    rql = 'Any X WHERE NOT Y %s X, X is %s' % (rschema, etype)
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                for entity in session.execute(rql).entities():
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                    print >> sys.stderr, '%s #%s is missing mandatory %s relation %s' % (
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                        entity.__regid__, entity.eid, role, rschema),
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                    if fix:
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                        #if entity.cw_describe()['source']['uri'] == 'system': XXX
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                        entity.cw_delete()
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                    notify_fixed(fix)
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   305
def check_mandatory_attributes(schema, session, eids, fix=1):
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    """check for entities stored in the system source missing some mandatory
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    attribute
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    """
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   309
    print 'Checking mandatory attributes'
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    for rschema in schema.relations():
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        if not rschema.final or rschema in VIRTUAL_RTYPES:
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            continue
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        for rdef in rschema.rdefs.values():
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            if rdef.cardinality[0] in '1+':
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                rql = 'Any X WHERE X %s NULL, X is %s, X cw_source S, S name "system"' % (
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                    rschema, rdef.subject)
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                for entity in session.execute(rql).entities():
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                    print >> sys.stderr, '%s #%s is missing mandatory attribute %s' % (
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                        entity.__regid__, entity.eid, rschema),
7036
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                    if fix:
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                        entity.cw_delete()
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                    notify_fixed(fix)
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0
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def check_metadata(schema, session, eids, fix=1):
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    """check entities has required metadata
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    FIXME: rewrite using RQL queries ?
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    """
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    print 'Checking metadata'
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    cursor = session.system_sql("SELECT DISTINCT type FROM entities;")
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    eidcolumn = SQL_PREFIX + 'eid'
0
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   333
    for etype, in cursor.fetchall():
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   334
        table = SQL_PREFIX + etype
1016
26387b836099 use datetime instead of mx.DateTime
sylvain.thenault@logilab.fr
parents: 713
diff changeset
   335
        for rel, default in ( ('creation_date', datetime.now()),
26387b836099 use datetime instead of mx.DateTime
sylvain.thenault@logilab.fr
parents: 713
diff changeset
   336
                              ('modification_date', datetime.now()), ):
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   337
            column = SQL_PREFIX + rel
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   338
            cursor = session.system_sql("SELECT %s FROM %s WHERE %s is NULL"
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   339
                                        % (eidcolumn, table, column))
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   340
            for eid, in cursor.fetchall():
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   341
                msg = '  %s with eid %s has no %s'
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   342
                print >> sys.stderr, msg % (etype, eid, rel),
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   343
                if fix:
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   344
                    session.system_sql("UPDATE %s SET %s=%%(v)s WHERE %s=%s ;"
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   345
                                       % (table, column, eidcolumn, eid),
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   346
                                       {'v': default})
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 6889
diff changeset
   347
                notify_fixed(fix)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   348
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   349
4675
9233a8350420 [test] don't display progress bar when testing checkintegrity
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4252
diff changeset
   350
def check(repo, cnx, checks, reindex, fix, withpb=True):
2476
1294a6bdf3bf application -> instance where it makes sense
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 2248
diff changeset
   351
    """check integrity of instance's repository,
0
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   352
    using given user and password to locally connect to the repository
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   353
    (no running cubicweb server needed)
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   354
    """
7398
26695dd703d8 [repository api] definitly kill usage of word 'pool' to refer to connections set used by a session
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7040
diff changeset
   355
    session = repo._get_session(cnx.sessionid, setcnxset=True)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   356
    # yo, launch checks
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   357
    if checks:
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   358
        eids_cache = {}
7685
902909e5f733 [c-c db-check] disable write security as well so we can delete stuff when needed (e.g. orphan TrInfo)
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7684
diff changeset
   359
        with security_enabled(session, read=False, write=False): # ensure no read security
4835
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   360
            for check in checks:
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   361
                check_func = globals()['check_%s' % check]
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   362
                check_func(repo.schema, session, eids_cache, fix=fix)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   363
        if fix:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   364
            cnx.commit()
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   365
        else:
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   366
            print
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   367
        if not fix:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   368
            print 'WARNING: Diagnostic run, nothing has been corrected'
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   369
    if reindex:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   370
        cnx.rollback()
7398
26695dd703d8 [repository api] definitly kill usage of word 'pool' to refer to connections set used by a session
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7040
diff changeset
   371
        session.set_cnxset()
4675
9233a8350420 [test] don't display progress bar when testing checkintegrity
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4252
diff changeset
   372
        reindex_entities(repo.schema, session, withpb=withpb)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   373
        cnx.commit()