server/checkintegrity.py
author Sylvain Thénault <sylvain.thenault@logilab.fr>
Tue, 30 Mar 2010 19:55:20 +0200
branchstable
changeset 5090 8c39d2bf58fd
parent 4835 13b0b96d7982
child 5338 3e5a256d17ba
permissions -rw-r--r--
[repo creation] removing existing entities of 'single' cardinality relatino should be considered as 'activeintegrity' hook. Also don't disable that category during repo creation to avoid pb such as two default workflows for one entity types
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"""Check integrity of a CubicWeb repository. Hum actually only the system database
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is checked.
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:organization: Logilab
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:copyright: 2001-2010 LOGILAB S.A. (Paris, FRANCE), license is LGPL v2.
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:contact: http://www.logilab.fr/ -- mailto:contact@logilab.fr
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:license: GNU Lesser General Public License, v2.1 - http://www.gnu.org/licenses
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"""
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from __future__ import with_statement
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__docformat__ = "restructuredtext en"
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import sys
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from datetime import datetime
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from logilab.common.shellutils import ProgressBar
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d02eed70937f [R repo, schema] use VIRTUAL_RTYPES const
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from cubicweb.schema import PURE_VIRTUAL_RTYPES
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from cubicweb.server.sqlutils import SQL_PREFIX
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from cubicweb.server.session import security_enabled
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def has_eid(sqlcursor, eid, eids):
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    """return true if the eid is a valid eid"""
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    if eids.has_key(eid):
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        return eids[eid]
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    sqlcursor.execute('SELECT type, source FROM entities WHERE eid=%s' % eid)
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    try:
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        etype, source = sqlcursor.fetchone()
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    except:
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        eids[eid] = False
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        return False
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    if source and source != 'system':
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        # XXX what to do...
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        eids[eid] = True
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        return True
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    sqlcursor.execute('SELECT * FROM %s%s WHERE %seid=%s' % (SQL_PREFIX, etype,
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                                                             SQL_PREFIX, eid))
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    result = sqlcursor.fetchall()
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    if len(result) == 0:
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        eids[eid] = False
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        return False
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    elif len(result) > 1:
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        msg = '  More than one entity with eid %s exists in source !'
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        print >> sys.stderr, msg % eid
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        print >> sys.stderr, '  WARNING : Unable to fix this, do it yourself !'
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    eids[eid] = True
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    return True
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# XXX move to yams?
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def etype_fti_containers(eschema, _done=None):
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    if _done is None:
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        _done = set()
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    _done.add(eschema)
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    containers = tuple(eschema.fulltext_containers())
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    if containers:
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        for rschema, target in containers:
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            if target == 'object':
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                targets = rschema.objects(eschema)
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            else:
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                targets = rschema.subjects(eschema)
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            for targeteschema in targets:
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                if targeteschema in _done:
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                    continue
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                _done.add(targeteschema)
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                for container in etype_fti_containers(targeteschema, _done):
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                    yield container
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    else:
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        yield eschema
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def reindex_entities(schema, session, withpb=True):
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    """reindex all entities in the repository"""
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    # deactivate modification_date hook since we don't want them
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    # to be updated due to the reindexation
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    repo = session.repo
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    cursor = session.pool['system']
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    if not repo.system_source.dbhelper.has_fti_table(cursor):
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        print 'no text index table'
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        dbhelper.init_fti(cursor)
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    repo.system_source.do_fti = True  # ensure full-text indexation is activated
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    etypes = set()
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    for eschema in schema.entities():
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        if eschema.final:
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            continue
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        indexable_attrs = tuple(eschema.indexable_attributes()) # generator
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        if not indexable_attrs:
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            continue
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        for container in etype_fti_containers(eschema):
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            etypes.add(container)
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    print 'Reindexing entities of type %s' % \
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          ', '.join(sorted(str(e) for e in etypes))
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    if withpb:
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        pb = ProgressBar(len(etypes) + 1)
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    # first monkey patch Entity.check to disable validation
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    # clear fti table first
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    session.system_sql('DELETE FROM %s' % session.repo.system_source.dbhelper.fti_table)
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    if withpb:
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        pb.update()
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    # reindex entities by generating rql queries which set all indexable
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    # attribute to their current value
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    source = repo.system_source
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    for eschema in etypes:
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        for entity in session.execute('Any X WHERE X is %s' % eschema).entities():
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            source.fti_index_entity(session, entity)
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        if withpb:
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            pb.update()
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def check_schema(schema, session, eids, fix=1):
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    """check serialized schema"""
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    print 'Checking serialized schema'
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    unique_constraints = ('SizeConstraint', 'FormatConstraint',
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                          'VocabularyConstraint', 'RQLConstraint',
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                          'RQLVocabularyConstraint')
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    rql = ('Any COUNT(X),RN,EN,ECTN GROUPBY RN,EN,ECTN ORDERBY 1 '
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           'WHERE X is CWConstraint, R constrained_by X, '
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           'R relation_type RT, R from_entity ET, RT name RN, '
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           'ET name EN, X cstrtype ECT, ECT name ECTN')
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    for count, rn, en, cstrname in session.execute(rql):
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        if count == 1:
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            continue
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   121
        if cstrname in unique_constraints:
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            print "ERROR: got %s %r constraints on relation %s.%s" % (
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                count, cstrname, en, rn)
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   124
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   125
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0
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def check_text_index(schema, session, eids, fix=1):
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    """check all entities registered in the text index"""
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    print 'Checking text index'
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    cursor = session.system_sql('SELECT uid FROM appears;')
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    for row in cursor.fetchall():
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        eid = row[0]
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        if not has_eid(cursor, eid, eids):
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            msg = '  Entity with eid %s exists in the text index but in no source'
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   135
            print >> sys.stderr, msg % eid,
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   136
            if fix:
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   137
                session.system_sql('DELETE FROM appears WHERE uid=%s;' % eid)
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   138
                print >> sys.stderr, ' [FIXED]'
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   139
            else:
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   140
                print >> sys.stderr
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diff changeset
   141
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   142
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   143
def check_entities(schema, session, eids, fix=1):
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   144
    """check all entities registered in the repo system table"""
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   145
    print 'Checking entities system table'
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   146
    cursor = session.system_sql('SELECT eid FROM entities;')
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   147
    for row in cursor.fetchall():
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   148
        eid = row[0]
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   149
        if not has_eid(cursor, eid, eids):
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            msg = '  Entity with eid %s exists in the system table but in no source'
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   151
            print >> sys.stderr, msg % eid,
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   152
            if fix:
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                session.system_sql('DELETE FROM entities WHERE eid=%s;' % eid)
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   154
                print >> sys.stderr, ' [FIXED]'
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   155
            else:
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   156
                print >> sys.stderr
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   157
    print 'Checking entities tables'
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   158
    for eschema in schema.entities():
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        if eschema.final:
0
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   160
            continue
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        table = SQL_PREFIX + eschema.type
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        column = SQL_PREFIX +  'eid'
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   163
        cursor = session.system_sql('SELECT %s FROM %s;' % (column, table))
0
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   164
        for row in cursor.fetchall():
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   165
            eid = row[0]
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   166
            # eids is full since we have fetched everyting from the entities table,
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   167
            # no need to call has_eid
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   168
            if not eid in eids or not eids[eid]:
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   169
                msg = '  Entity with eid %s exists in the %s table but not in the system table'
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   170
                print >> sys.stderr, msg % (eid, eschema.type),
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   171
                if fix:
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   172
                    session.system_sql('DELETE FROM %s WHERE %s=%s;' % (table, column, eid))
0
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   173
                    print >> sys.stderr, ' [FIXED]'
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   174
                else:
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   175
                    print >> sys.stderr
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   176
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   177
0
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   178
def bad_related_msg(rtype, target, eid, fix):
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   179
    msg = '  A relation %s with %s eid %s exists but no such entity in sources'
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   180
    print >> sys.stderr, msg % (rtype, target, eid),
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   181
    if fix:
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   182
        print >> sys.stderr, ' [FIXED]'
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   183
    else:
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   184
        print >> sys.stderr
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   185
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   186
0
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   187
def check_relations(schema, session, eids, fix=1):
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   188
    """check all relations registered in the repo system table"""
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   189
    print 'Checking relations'
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   190
    for rschema in schema.relations():
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   191
        if rschema.final or rschema in PURE_VIRTUAL_RTYPES:
0
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   192
            continue
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   193
        if rschema.inlined:
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   194
            for subjtype in rschema.subjects():
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   195
                table = SQL_PREFIX + str(subjtype)
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   196
                column = SQL_PREFIX +  str(rschema)
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diff changeset
   197
                sql = 'SELECT %s FROM %s WHERE %s IS NOT NULL;' % (
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diff changeset
   198
                    column, table, column)
380
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diff changeset
   199
                cursor = session.system_sql(sql)
0
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   200
                for row in cursor.fetchall():
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   201
                    eid = row[0]
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   202
                    if not has_eid(cursor, eid, eids):
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diff changeset
   203
                        bad_related_msg(rschema, 'object', eid, fix)
0
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   204
                        if fix:
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diff changeset
   205
                            sql = 'UPDATE %s SET %s=NULL WHERE %s=%s;' % (
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diff changeset
   206
                                table, column, column, eid)
381
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diff changeset
   207
                            session.system_sql(sql)
0
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   208
            continue
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   209
        cursor = session.system_sql('SELECT eid_from FROM %s_relation;' % rschema)
0
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   210
        for row in cursor.fetchall():
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   211
            eid = row[0]
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   212
            if not has_eid(cursor, eid, eids):
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diff changeset
   213
                bad_related_msg(rschema, 'subject', eid, fix)
0
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diff changeset
   214
                if fix:
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diff changeset
   215
                    sql = 'DELETE FROM %s_relation WHERE eid_from=%s;' % (
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diff changeset
   216
                        rschema, eid)
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diff changeset
   217
                    session.system_sql(sql)
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   218
        cursor = session.system_sql('SELECT eid_to FROM %s_relation;' % rschema)
0
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   219
        for row in cursor.fetchall():
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            eid = row[0]
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   221
            if not has_eid(cursor, eid, eids):
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diff changeset
   222
                bad_related_msg(rschema, 'object', eid, fix)
0
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   223
                if fix:
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diff changeset
   224
                    sql = 'DELETE FROM %s_relation WHERE eid_to=%s;' % (
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diff changeset
   225
                        rschema, eid)
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diff changeset
   226
                    session.system_sql(sql)
0
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diff changeset
   227
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diff changeset
   228
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   229
def check_metadata(schema, session, eids, fix=1):
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   230
    """check entities has required metadata
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diff changeset
   231
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   232
    FIXME: rewrite using RQL queries ?
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   233
    """
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diff changeset
   234
    print 'Checking metadata'
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diff changeset
   235
    cursor = session.system_sql("SELECT DISTINCT type FROM entities;")
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diff changeset
   236
    eidcolumn = SQL_PREFIX + 'eid'
0
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   237
    for etype, in cursor.fetchall():
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diff changeset
   238
        table = SQL_PREFIX + etype
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26387b836099 use datetime instead of mx.DateTime
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diff changeset
   239
        for rel, default in ( ('creation_date', datetime.now()),
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diff changeset
   240
                              ('modification_date', datetime.now()), ):
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diff changeset
   241
            column = SQL_PREFIX + rel
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diff changeset
   242
            cursor = session.system_sql("SELECT %s FROM %s WHERE %s is NULL"
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diff changeset
   243
                                        % (eidcolumn, table, column))
0
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            for eid, in cursor.fetchall():
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                msg = '  %s with eid %s has no %s'
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                print >> sys.stderr, msg % (etype, eid, rel),
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                if fix:
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                    session.system_sql("UPDATE %s SET %s=%%(v)s WHERE %s=%s ;"
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                                       % (table, column, eidcolumn, eid),
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                                       {'v': default})
0
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                    print >> sys.stderr, ' [FIXED]'
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                else:
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                    print >> sys.stderr
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    cursor = session.system_sql('SELECT MIN(%s) FROM %sCWUser;' % (eidcolumn,
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                                                                  SQL_PREFIX))
0
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    default_user_eid = cursor.fetchone()[0]
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    assert default_user_eid is not None, 'no user defined !'
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    for rel, default in ( ('owned_by', default_user_eid), ):
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        cursor = session.system_sql("SELECT eid, type FROM entities "
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                                    "WHERE NOT EXISTS "
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                                    "(SELECT 1 FROM %s_relation WHERE eid_from=eid);"
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                                    % rel)
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        for eid, etype in cursor.fetchall():
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            msg = '  %s with eid %s has no %s relation'
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            print >> sys.stderr, msg % (etype, eid, rel),
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            if fix:
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                session.system_sql('INSERT INTO %s_relation VALUES (%s, %s) ;'
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                                   % (rel, eid, default))
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                print >> sys.stderr, ' [FIXED]'
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            else:
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                print >> sys.stderr
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def check(repo, cnx, checks, reindex, fix, withpb=True):
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    """check integrity of instance's repository,
0
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    using given user and password to locally connect to the repository
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    (no running cubicweb server needed)
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    """
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    session = repo._get_session(cnx.sessionid, setpool=True)
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    # yo, launch checks
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    if checks:
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        eids_cache = {}
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13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
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        with security_enabled(session, read=False): # ensure no read security
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            for check in checks:
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                check_func = globals()['check_%s' % check]
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                check_func(repo.schema, session, eids_cache, fix=fix)
0
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        if fix:
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            cnx.commit()
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        else:
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            print
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        if not fix:
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            print 'WARNING: Diagnostic run, nothing has been corrected'
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    if reindex:
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        cnx.rollback()
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        session.set_pool()
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9233a8350420 [test] don't display progress bar when testing checkintegrity
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        reindex_entities(repo.schema, session, withpb=withpb)
0
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        cnx.commit()