server/checkintegrity.py
author Pierre-Yves David <pierre-yves.david@logilab.fr>
Mon, 17 Jun 2013 17:27:08 +0200
changeset 9048 8481fc6aa6dd
parent 8900 010a59e12d89
child 9171 be9596750678
permissions -rw-r--r--
[server/session] Implement anonymous_session Now we have a simple rule to compute if a session is anonymous we can implement the property for server session too. Having it on server side session will helps the rework of the API to access repository. The new schema drop the concept of DBAPISession and use server side session for the same purpose. Related to #2953943 Related to #2503918
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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# copyright 2003-2012 LOGILAB S.A. (Paris, FRANCE), all rights reserved.
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# contact http://www.logilab.fr/ -- mailto:contact@logilab.fr
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#
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# This file is part of CubicWeb.
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#
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# CubicWeb is free software: you can redistribute it and/or modify it under the
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# terms of the GNU Lesser General Public License as published by the Free
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# Software Foundation, either version 2.1 of the License, or (at your option)
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# any later version.
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#
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# CubicWeb is distributed in the hope that it will be useful, but WITHOUT
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# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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# FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more
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# details.
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#
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# You should have received a copy of the GNU Lesser General Public License along
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# with CubicWeb.  If not, see <http://www.gnu.org/licenses/>.
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"""Integrity checking tool for instances:
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* integrity of a CubicWeb repository. Hum actually only the system database is
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  checked.
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"""
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__docformat__ = "restructuredtext en"
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import sys
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from datetime import datetime
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from logilab.common.shellutils import ProgressBar
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from cubicweb.schema import PURE_VIRTUAL_RTYPES, VIRTUAL_RTYPES
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from cubicweb.server.sqlutils import SQL_PREFIX
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def notify_fixed(fix):
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    if fix:
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        sys.stderr.write(' [FIXED]')
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    sys.stderr.write('\n')
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def has_eid(session, sqlcursor, eid, eids):
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    """return true if the eid is a valid eid"""
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    if eid in eids:
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        return eids[eid]
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    sqlcursor.execute('SELECT type, source FROM entities WHERE eid=%s' % eid)
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    try:
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        etype, source = sqlcursor.fetchone()
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    except Exception:
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        eids[eid] = False
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        return False
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    if source and source != 'system':
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        try:
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            # insert eid *and* etype to attempt checking entity has not been
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            # replaced by another subsquently to a restore of an old dump
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            if session.execute('Any X WHERE X is %s, X eid %%(x)s' % etype,
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                               {'x': eid}):
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                eids[eid] = True
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                return True
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        except Exception: # TypeResolverError, Unauthorized...
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            pass
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        eids[eid] = False
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        return False
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    sqlcursor.execute('SELECT * FROM %s%s WHERE %seid=%s' % (SQL_PREFIX, etype,
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                                                             SQL_PREFIX, eid))
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    result = sqlcursor.fetchall()
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    if len(result) == 0:
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        eids[eid] = False
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        return False
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    elif len(result) > 1:
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        msg = ('  More than one entity with eid %s exists in source !\n'
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               '  WARNING : Unable to fix this, do it yourself !\n')
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        sys.stderr.write(msg % eid)
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    eids[eid] = True
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    return True
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# XXX move to yams?
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def etype_fti_containers(eschema, _done=None):
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    if _done is None:
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        _done = set()
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    _done.add(eschema)
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    containers = tuple(eschema.fulltext_containers())
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    if containers:
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        for rschema, target in containers:
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            if target == 'object':
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                targets = rschema.objects(eschema)
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            else:
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                targets = rschema.subjects(eschema)
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            for targeteschema in targets:
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                if targeteschema in _done:
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                    continue
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                _done.add(targeteschema)
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                for container in etype_fti_containers(targeteschema, _done):
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                    yield container
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    else:
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        yield eschema
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def reindex_entities(schema, session, withpb=True, etypes=None):
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    """reindex all entities in the repository"""
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    # deactivate modification_date hook since we don't want them
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    # to be updated due to the reindexation
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    repo = session.repo
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    cursor = session.cnxset['system']
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    dbhelper = session.repo.system_source.dbhelper
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    if not dbhelper.has_fti_table(cursor):
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        print 'no text index table'
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        dbhelper.init_fti(cursor)
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    repo.system_source.do_fti = True  # ensure full-text indexation is activated
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    if etypes is None:
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        print 'Reindexing entities'
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        etypes = set()
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        for eschema in schema.entities():
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            if eschema.final:
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                continue
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            indexable_attrs = tuple(eschema.indexable_attributes()) # generator
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            if not indexable_attrs:
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   113
                continue
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   114
            for container in etype_fti_containers(eschema):
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   115
                etypes.add(container)
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   116
        # clear fti table first
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        session.system_sql('DELETE FROM %s' % dbhelper.fti_table)
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   118
    else:
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   119
        print 'Reindexing entities of type %s' % \
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   120
              ', '.join(sorted(str(e) for e in etypes))
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   121
        # clear fti table first. Use subquery for sql compatibility
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   122
        session.system_sql("DELETE FROM %s WHERE EXISTS(SELECT 1 FROM ENTITIES "
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   123
                           "WHERE eid=%s AND type IN (%s))" % (
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   124
                               dbhelper.fti_table, dbhelper.fti_uid_attr,
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   125
                               ','.join("'%s'" % etype for etype in etypes)))
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   126
    if withpb:
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   127
        pb = ProgressBar(len(etypes) + 1)
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        pb.update()
0
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    # reindex entities by generating rql queries which set all indexable
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   130
    # attribute to their current value
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   131
    source = repo.system_source
0
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   132
    for eschema in etypes:
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        etype_class = session.vreg['etypes'].etype_class(str(eschema))
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   134
        for fti_rql in etype_class.cw_fti_index_rql_queries(session):
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   135
            rset = session.execute(fti_rql)
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   136
            source.fti_index_entities(session, rset.entities())
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   137
            # clear entity cache to avoid high memory consumption on big tables
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diff changeset
   138
            session.drop_entity_cache()
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   139
        if withpb:
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   140
            pb.update()
0
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   141
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   142
380
06e7f2932afe db-check fixes
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   143
def check_schema(schema, session, eids, fix=1):
0
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    """check serialized schema"""
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    print 'Checking serialized schema'
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   146
    unique_constraints = ('SizeConstraint', 'FormatConstraint',
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4bf975c049a6 [db-check] RQLConstraint is not a 'unique' constraint
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diff changeset
   147
                          'VocabularyConstraint',
0
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                          'RQLVocabularyConstraint')
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diff changeset
   149
    rql = ('Any COUNT(X),RN,SN,ON,CTN GROUPBY RN,SN,ON,CTN ORDERBY 1 '
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5fe84a5f7035 rename internal entity types to have CW prefix instead of E
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diff changeset
   150
           'WHERE X is CWConstraint, R constrained_by X, '
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parents: 4835
diff changeset
   151
           'R relation_type RT, RT name RN, R from_entity ST, ST name SN, '
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diff changeset
   152
           'R to_entity OT, OT name ON, X cstrtype CT, CT name CTN')
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diff changeset
   153
    for count, rn, sn, on, cstrname in session.execute(rql):
0
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   154
        if count == 1:
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   155
            continue
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diff changeset
   156
        if cstrname in unique_constraints:
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diff changeset
   157
            print "ERROR: got %s %r constraints on relation %s.%s.%s" % (
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diff changeset
   158
                count, cstrname, sn, rn, on)
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parents: 5424
diff changeset
   159
            if fix:
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diff changeset
   160
                print 'dunno how to fix, do it yourself'
0
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parents:
diff changeset
   161
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diff changeset
   162
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diff changeset
   163
0
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diff changeset
   164
def check_text_index(schema, session, eids, fix=1):
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   165
    """check all entities registered in the text index"""
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   166
    print 'Checking text index'
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d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   167
    msg = '  Entity with eid %s exists in the text index but in no source (autofix will remove from text index)'
0
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diff changeset
   168
    cursor = session.system_sql('SELECT uid FROM appears;')
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diff changeset
   169
    for row in cursor.fetchall():
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   170
        eid = row[0]
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b83327846450 [db-check] fix unexistent multisource entity detection
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diff changeset
   171
        if not has_eid(session, cursor, eid, eids):
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4c954e1e73ef [lint] remove uses of "print >> sys.stderr" (closes #1908571)
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diff changeset
   172
            sys.stderr.write(msg % eid)
0
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   173
            if fix:
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   174
                session.system_sql('DELETE FROM appears WHERE uid=%s;' % eid)
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8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
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diff changeset
   175
            notify_fixed(fix)
0
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parents:
diff changeset
   176
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parents:
diff changeset
   177
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   178
def check_entities(schema, session, eids, fix=1):
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   179
    """check all entities registered in the repo system table"""
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   180
    print 'Checking entities system table'
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d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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   181
    # system table but no source
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   182
    msg = '  Entity with eid %s exists in the system table but in no source (autofix will delete the entity)'
0
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   183
    cursor = session.system_sql('SELECT eid FROM entities;')
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   184
    for row in cursor.fetchall():
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   185
        eid = row[0]
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parents: 5338
diff changeset
   186
        if not has_eid(session, cursor, eid, eids):
7896
4c954e1e73ef [lint] remove uses of "print >> sys.stderr" (closes #1908571)
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diff changeset
   187
            sys.stderr.write(msg % eid)
0
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diff changeset
   188
            if fix:
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   189
                session.system_sql('DELETE FROM entities WHERE eid=%s;' % eid)
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8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
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parents: 6889
diff changeset
   190
            notify_fixed(fix)
7965
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diff changeset
   191
    # source in entities, but no relation cw_source
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   192
    applcwversion = session.repo.get_versions().get('cubicweb')
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diff changeset
   193
    if applcwversion >= (3,13,1): # entities.asource appeared in 3.13.1
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diff changeset
   194
        cursor = session.system_sql('SELECT e.eid FROM entities as e, cw_CWSource as s '
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diff changeset
   195
                                    'WHERE s.cw_name=e.asource AND '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   196
                                    'NOT EXISTS(SELECT 1 FROM cw_source_relation as cs '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   197
                                    '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid) '
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diff changeset
   198
                                    'ORDER BY e.eid')
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diff changeset
   199
        msg = ('  Entity with eid %s refers to source in entities table, '
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diff changeset
   200
               'but is missing relation cw_source (autofix will create the relation)\n')
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diff changeset
   201
        for row in cursor.fetchall():
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diff changeset
   202
            sys.stderr.write(msg % row[0])
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diff changeset
   203
        if fix:
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   204
            session.system_sql('INSERT INTO cw_source_relation (eid_from, eid_to) '
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diff changeset
   205
                               'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWSource as s '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   206
                               'WHERE s.cw_name=e.asource AND NOT EXISTS(SELECT 1 FROM cw_source_relation as cs '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   207
                               '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   208
            notify_fixed(True)
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   209
    # inconsistencies for 'is'
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diff changeset
   210
    msg = '  %s #%s is missing relation "is" (autofix will create the relation)\n'
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   211
    cursor = session.system_sql('SELECT e.type, e.eid FROM entities as e, cw_CWEType as s '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   212
                                'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_relation as cs '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   213
                                '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid) '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   214
                                'ORDER BY e.eid')
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diff changeset
   215
    for row in cursor.fetchall():
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diff changeset
   216
        sys.stderr.write(msg % row)
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   217
    if fix:
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   218
        session.system_sql('INSERT INTO is_relation (eid_from, eid_to) '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   219
                           'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWEType as s '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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   220
                           'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_relation as cs '
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diff changeset
   221
                           '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
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   222
        notify_fixed(True)
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   223
    # inconsistencies for 'is_instance_of'
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   224
    msg = '  %s #%s is missing relation "is_instance_of" (autofix will create the relation)\n'
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diff changeset
   225
    cursor = session.system_sql('SELECT e.type, e.eid FROM entities as e, cw_CWEType as s '
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diff changeset
   226
                                'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_instance_of_relation as cs '
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diff changeset
   227
                                '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid) '
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diff changeset
   228
                                'ORDER BY e.eid')
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diff changeset
   229
    for row in cursor.fetchall():
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diff changeset
   230
        sys.stderr.write(msg % row)
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diff changeset
   231
    if fix:
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diff changeset
   232
        session.system_sql('INSERT INTO is_instance_of_relation (eid_from, eid_to) '
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diff changeset
   233
                           'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWEType as s '
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diff changeset
   234
                           'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_instance_of_relation as cs '
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diff changeset
   235
                           '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
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   236
        notify_fixed(True)
0
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    print 'Checking entities tables'
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    msg = '  Entity with eid %s exists in the %s table but not in the system table (autofix will delete the entity)'
0
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   239
    for eschema in schema.entities():
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   240
        if eschema.final:
0
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            continue
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   242
        table = SQL_PREFIX + eschema.type
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diff changeset
   243
        column = SQL_PREFIX +  'eid'
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   244
        cursor = session.system_sql('SELECT %s FROM %s;' % (column, table))
0
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        for row in cursor.fetchall():
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            eid = row[0]
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diff changeset
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            # eids is full since we have fetched everything from the entities table,
0
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            # no need to call has_eid
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            if not eid in eids or not eids[eid]:
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4c954e1e73ef [lint] remove uses of "print >> sys.stderr" (closes #1908571)
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                sys.stderr.write(msg % (eid, eschema.type))
0
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   251
                if fix:
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                    session.system_sql('DELETE FROM %s WHERE %s=%s;' % (table, column, eid))
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   253
                notify_fixed(fix)
1802
d628defebc17 delete-trailing-whitespace + some copyright update
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   254
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0
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   256
def bad_related_msg(rtype, target, eid, fix):
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   257
    msg = '  A relation %s with %s eid %s exists but no such entity in sources'
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4c954e1e73ef [lint] remove uses of "print >> sys.stderr" (closes #1908571)
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   258
    sys.stderr.write(msg % (rtype, target, eid))
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   259
    notify_fixed(fix)
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0
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def check_relations(schema, session, eids, fix=1):
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   263
    """check that eids referenced by relations are registered in the repo system
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   264
    table
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    """
0
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    print 'Checking relations'
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    for rschema in schema.relations():
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        if rschema.final or rschema.type in PURE_VIRTUAL_RTYPES:
0
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            continue
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        if rschema.inlined:
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            for subjtype in rschema.subjects():
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                table = SQL_PREFIX + str(subjtype)
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                column = SQL_PREFIX +  str(rschema)
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                sql = 'SELECT %s FROM %s WHERE %s IS NOT NULL;' % (
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                    column, table, column)
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                cursor = session.system_sql(sql)
0
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                for row in cursor.fetchall():
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                    eid = row[0]
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   279
                    if not has_eid(session, cursor, eid, eids):
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                        bad_related_msg(rschema, 'object', eid, fix)
0
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                        if fix:
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d5bd1b659ce8 [db-check] fix sql to fix bad eid referenced by inlined relation
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diff changeset
   282
                            sql = 'UPDATE %s SET %s=NULL WHERE %s=%s;' % (
d5bd1b659ce8 [db-check] fix sql to fix bad eid referenced by inlined relation
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diff changeset
   283
                                table, column, column, eid)
381
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parents: 380
diff changeset
   284
                            session.system_sql(sql)
0
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            continue
6185
229006accd26 [c-c db-check] skip error while checking relation, useful when analyzing really broken database (after a migration failure for instance
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parents: 6132
diff changeset
   286
        try:
229006accd26 [c-c db-check] skip error while checking relation, useful when analyzing really broken database (after a migration failure for instance
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parents: 6132
diff changeset
   287
            cursor = session.system_sql('SELECT eid_from FROM %s_relation;' % rschema)
8695
358d8bed9626 [toward-py3k] rewrite to "except AnException as exc:" (part of #2711624)
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parents: 8694
diff changeset
   288
        except Exception as ex:
6185
229006accd26 [c-c db-check] skip error while checking relation, useful when analyzing really broken database (after a migration failure for instance
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diff changeset
   289
            # usually because table doesn't exist
229006accd26 [c-c db-check] skip error while checking relation, useful when analyzing really broken database (after a migration failure for instance
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diff changeset
   290
            print 'ERROR', ex
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diff changeset
   291
            continue
0
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   292
        for row in cursor.fetchall():
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   293
            eid = row[0]
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diff changeset
   294
            if not has_eid(session, cursor, eid, eids):
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   295
                bad_related_msg(rschema, 'subject', eid, fix)
0
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   296
                if fix:
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diff changeset
   297
                    sql = 'DELETE FROM %s_relation WHERE eid_from=%s;' % (
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diff changeset
   298
                        rschema, eid)
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parents: 0
diff changeset
   299
                    session.system_sql(sql)
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diff changeset
   300
        cursor = session.system_sql('SELECT eid_to FROM %s_relation;' % rschema)
0
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diff changeset
   301
        for row in cursor.fetchall():
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diff changeset
   302
            eid = row[0]
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parents: 5338
diff changeset
   303
            if not has_eid(session, cursor, eid, eids):
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diff changeset
   304
                bad_related_msg(rschema, 'object', eid, fix)
0
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diff changeset
   305
                if fix:
380
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parents: 0
diff changeset
   306
                    sql = 'DELETE FROM %s_relation WHERE eid_to=%s;' % (
1251
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diff changeset
   307
                        rschema, eid)
380
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parents: 0
diff changeset
   308
                    session.system_sql(sql)
0
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parents:
diff changeset
   309
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diff changeset
   310
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
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parents: 7035
diff changeset
   311
def check_mandatory_relations(schema, session, eids, fix=1):
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diff changeset
   312
    """check entities missing some mandatory relation"""
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diff changeset
   313
    print 'Checking mandatory relations'
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d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   314
    msg = '%s #%s is missing mandatory %s relation %s (autofix will delete the entity)'
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
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parents: 7035
diff changeset
   315
    for rschema in schema.relations():
8527
6151b0199bc1 [c-c db-check] don't skip is/is_instance_of mandatory relation to avoid telling two opposite messages when the relation is missing. Closes #2465659
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 8450
diff changeset
   316
        if rschema.final or rschema in PURE_VIRTUAL_RTYPES or rschema in ('is', 'is_instance_of'):
7036
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diff changeset
   317
            continue
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diff changeset
   318
        smandatory = set()
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
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diff changeset
   319
        omandatory = set()
8696
0bb18407c053 [toward py3k] rewrite dict.keys() and dict.values() (part of #2711624)
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parents: 8695
diff changeset
   320
        for rdef in rschema.rdefs.itervalues():
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
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parents: 7035
diff changeset
   321
            if rdef.cardinality[0] in '1+':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
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parents: 7035
diff changeset
   322
                smandatory.add(rdef.subject)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
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diff changeset
   323
            if rdef.cardinality[1] in '1+':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
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diff changeset
   324
                omandatory.add(rdef.object)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
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diff changeset
   325
        for role, etypes in (('subject', smandatory), ('object', omandatory)):
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
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parents: 7035
diff changeset
   326
            for etype in etypes:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   327
                if role == 'subject':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   328
                    rql = 'Any X WHERE NOT X %s Y, X is %s' % (rschema, etype)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   329
                else:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   330
                    rql = 'Any X WHERE NOT Y %s X, X is %s' % (rschema, etype)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   331
                for entity in session.execute(rql).entities():
8900
010a59e12d89 use cw_etype instead of __regid__
Pierre-Yves David <pierre-yves.david@logilab.fr>
parents: 8696
diff changeset
   332
                    sys.stderr.write(msg % (entity.cw_etype, entity.eid, role, rschema))
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   333
                    if fix:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   334
                        #if entity.cw_describe()['source']['uri'] == 'system': XXX
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   335
                        entity.cw_delete() # XXX this is BRUTAL!
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   336
                    notify_fixed(fix)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   337
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   338
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   339
def check_mandatory_attributes(schema, session, eids, fix=1):
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   340
    """check for entities stored in the system source missing some mandatory
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   341
    attribute
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   342
    """
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   343
    print 'Checking mandatory attributes'
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   344
    msg = '%s #%s is missing mandatory attribute %s (autofix will delete the entity)'
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   345
    for rschema in schema.relations():
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   346
        if not rschema.final or rschema in VIRTUAL_RTYPES:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   347
            continue
8696
0bb18407c053 [toward py3k] rewrite dict.keys() and dict.values() (part of #2711624)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 8695
diff changeset
   348
        for rdef in rschema.rdefs.itervalues():
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   349
            if rdef.cardinality[0] in '1+':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   350
                rql = 'Any X WHERE X %s NULL, X is %s, X cw_source S, S name "system"' % (
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   351
                    rschema, rdef.subject)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   352
                for entity in session.execute(rql).entities():
8900
010a59e12d89 use cw_etype instead of __regid__
Pierre-Yves David <pierre-yves.david@logilab.fr>
parents: 8696
diff changeset
   353
                    sys.stderr.write(msg % (entity.cw_etype, entity.eid, rschema))
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   354
                    if fix:
7682
07b592a62be3 [c-c db-check] drop some deprecation warning
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7473
diff changeset
   355
                        entity.cw_delete()
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   356
                    notify_fixed(fix)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   357
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   358
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   359
def check_metadata(schema, session, eids, fix=1):
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   360
    """check entities has required metadata
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   361
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   362
    FIXME: rewrite using RQL queries ?
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   363
    """
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   364
    print 'Checking metadata'
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   365
    cursor = session.system_sql("SELECT DISTINCT type FROM entities;")
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   366
    eidcolumn = SQL_PREFIX + 'eid'
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   367
    msg = '  %s with eid %s has no %s (autofix will set it to now)'
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   368
    for etype, in cursor.fetchall():
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   369
        table = SQL_PREFIX + etype
1016
26387b836099 use datetime instead of mx.DateTime
sylvain.thenault@logilab.fr
parents: 713
diff changeset
   370
        for rel, default in ( ('creation_date', datetime.now()),
26387b836099 use datetime instead of mx.DateTime
sylvain.thenault@logilab.fr
parents: 713
diff changeset
   371
                              ('modification_date', datetime.now()), ):
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   372
            column = SQL_PREFIX + rel
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   373
            cursor = session.system_sql("SELECT %s FROM %s WHERE %s is NULL"
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   374
                                        % (eidcolumn, table, column))
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   375
            for eid, in cursor.fetchall():
7896
4c954e1e73ef [lint] remove uses of "print >> sys.stderr" (closes #1908571)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7815
diff changeset
   376
                sys.stderr.write(msg % (etype, eid, rel))
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   377
                if fix:
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   378
                    session.system_sql("UPDATE %s SET %s=%%(v)s WHERE %s=%s ;"
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   379
                                       % (table, column, eidcolumn, eid),
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   380
                                       {'v': default})
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 6889
diff changeset
   381
                notify_fixed(fix)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   382
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   383
4675
9233a8350420 [test] don't display progress bar when testing checkintegrity
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4252
diff changeset
   384
def check(repo, cnx, checks, reindex, fix, withpb=True):
2476
1294a6bdf3bf application -> instance where it makes sense
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 2248
diff changeset
   385
    """check integrity of instance's repository,
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   386
    using given user and password to locally connect to the repository
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   387
    (no running cubicweb server needed)
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   388
    """
7398
26695dd703d8 [repository api] definitly kill usage of word 'pool' to refer to connections set used by a session
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7040
diff changeset
   389
    session = repo._get_session(cnx.sessionid, setcnxset=True)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   390
    # yo, launch checks
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   391
    if checks:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   392
        eids_cache = {}
8562
0d2fb4604265 [session] fix arguments default value and promote usage of security_enabled as session method. Closes #2481820
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 8527
diff changeset
   393
        with session.security_enabled(read=False, write=False): # ensure no read security
4835
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   394
            for check in checks:
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   395
                check_func = globals()['check_%s' % check]
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   396
                check_func(repo.schema, session, eids_cache, fix=fix)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   397
        if fix:
8578
f6ea4ea63d57 [check integrity] use session consistently
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 8562
diff changeset
   398
            session.commit()
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   399
        else:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   400
            print
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   401
        if not fix:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   402
            print 'WARNING: Diagnostic run, nothing has been corrected'
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   403
    if reindex:
8578
f6ea4ea63d57 [check integrity] use session consistently
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 8562
diff changeset
   404
        session.rollback()
7398
26695dd703d8 [repository api] definitly kill usage of word 'pool' to refer to connections set used by a session
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7040
diff changeset
   405
        session.set_cnxset()
4675
9233a8350420 [test] don't display progress bar when testing checkintegrity
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4252
diff changeset
   406
        reindex_entities(repo.schema, session, withpb=withpb)
8578
f6ea4ea63d57 [check integrity] use session consistently
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 8562
diff changeset
   407
        session.commit()