server/checkintegrity.py
author Aurelien Campeas <aurelien.campeas@logilab.fr>
Thu, 22 Sep 2011 16:53:46 +0200
branchstable
changeset 7831 6af00dbfaadd
parent 7815 2a164a9cf81c
child 7896 4c954e1e73ef
permissions -rw-r--r--
[cubicweb.js] log evalJSON errors (closes #1947473)
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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# copyright 2003-2011 LOGILAB S.A. (Paris, FRANCE), all rights reserved.
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# contact http://www.logilab.fr/ -- mailto:contact@logilab.fr
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#
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# This file is part of CubicWeb.
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#
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# CubicWeb is free software: you can redistribute it and/or modify it under the
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# terms of the GNU Lesser General Public License as published by the Free
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# Software Foundation, either version 2.1 of the License, or (at your option)
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# any later version.
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#
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# CubicWeb is distributed in the hope that it will be useful, but WITHOUT
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# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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# FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more
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# details.
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#
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# You should have received a copy of the GNU Lesser General Public License along
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# with CubicWeb.  If not, see <http://www.gnu.org/licenses/>.
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"""Integrity checking tool for instances:
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* integrity of a CubicWeb repository. Hum actually only the system database is
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  checked.
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"""
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from __future__ import with_statement
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__docformat__ = "restructuredtext en"
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import sys
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from datetime import datetime
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from logilab.common.shellutils import ProgressBar
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from cubicweb.schema import PURE_VIRTUAL_RTYPES, VIRTUAL_RTYPES
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from cubicweb.server.sqlutils import SQL_PREFIX
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from cubicweb.server.session import security_enabled
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def notify_fixed(fix):
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    if fix:
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        print >> sys.stderr, ' [FIXED]'
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    else:
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        print >> sys.stderr
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def has_eid(session, sqlcursor, eid, eids):
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    """return true if the eid is a valid eid"""
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    if eid in eids:
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        return eids[eid]
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    sqlcursor.execute('SELECT type, source FROM entities WHERE eid=%s' % eid)
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    try:
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        etype, source = sqlcursor.fetchone()
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    except Exception:
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        eids[eid] = False
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        return False
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    if source and source != 'system':
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        try:
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            # insert eid *and* etype to attempt checking entity has not been
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            # replaced by another subsquently to a restore of an old dump
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            if session.execute('Any X WHERE X is %s, X eid %%(x)s' % etype,
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                               {'x': eid}):
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                eids[eid] = True
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                return True
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        except Exception: # TypeResolverError, Unauthorized...
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            pass
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        eids[eid] = False
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        return False
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    sqlcursor.execute('SELECT * FROM %s%s WHERE %seid=%s' % (SQL_PREFIX, etype,
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                                                             SQL_PREFIX, eid))
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    result = sqlcursor.fetchall()
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    if len(result) == 0:
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        eids[eid] = False
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        return False
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    elif len(result) > 1:
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        msg = '  More than one entity with eid %s exists in source !'
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        print >> sys.stderr, msg % eid
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        print >> sys.stderr, '  WARNING : Unable to fix this, do it yourself !'
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    eids[eid] = True
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    return True
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# XXX move to yams?
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def etype_fti_containers(eschema, _done=None):
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    if _done is None:
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        _done = set()
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    _done.add(eschema)
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    containers = tuple(eschema.fulltext_containers())
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    if containers:
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        for rschema, target in containers:
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            if target == 'object':
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                targets = rschema.objects(eschema)
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            else:
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                targets = rschema.subjects(eschema)
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            for targeteschema in targets:
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                if targeteschema in _done:
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                    continue
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                _done.add(targeteschema)
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                for container in etype_fti_containers(targeteschema, _done):
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                    yield container
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    else:
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        yield eschema
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def reindex_entities(schema, session, withpb=True, etypes=None):
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    """reindex all entities in the repository"""
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    # deactivate modification_date hook since we don't want them
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    # to be updated due to the reindexation
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    repo = session.repo
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    cursor = session.cnxset['system']
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    dbhelper = session.repo.system_source.dbhelper
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    if not dbhelper.has_fti_table(cursor):
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        print 'no text index table'
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        dbhelper.init_fti(cursor)
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    repo.system_source.do_fti = True  # ensure full-text indexation is activated
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    if etypes is None:
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        print 'Reindexing entities'
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        etypes = set()
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        for eschema in schema.entities():
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diff changeset
   114
            if eschema.final:
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diff changeset
   115
                continue
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diff changeset
   116
            indexable_attrs = tuple(eschema.indexable_attributes()) # generator
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diff changeset
   117
            if not indexable_attrs:
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diff changeset
   118
                continue
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diff changeset
   119
            for container in etype_fti_containers(eschema):
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parents: 5693
diff changeset
   120
                etypes.add(container)
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987086484876 [fti migration] test and fix reindexation of some specific entity types
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parents: 5850
diff changeset
   121
        # clear fti table first
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parents: 5850
diff changeset
   122
        session.system_sql('DELETE FROM %s' % dbhelper.fti_table)
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parents: 5850
diff changeset
   123
    else:
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parents: 5850
diff changeset
   124
        print 'Reindexing entities of type %s' % \
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diff changeset
   125
              ', '.join(sorted(str(e) for e in etypes))
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parents: 5850
diff changeset
   126
        # clear fti table first. Use subquery for sql compatibility
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parents: 5850
diff changeset
   127
        session.system_sql("DELETE FROM %s WHERE EXISTS(SELECT 1 FROM ENTITIES "
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diff changeset
   128
                           "WHERE eid=%s AND type IN (%s))" % (
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diff changeset
   129
                               dbhelper.fti_table, dbhelper.fti_uid_attr,
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diff changeset
   130
                               ','.join("'%s'" % etype for etype in etypes)))
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9233a8350420 [test] don't display progress bar when testing checkintegrity
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parents: 4252
diff changeset
   131
    if withpb:
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913979c79244 [db-fti-index] simple fix fpr progressbar-related crash when etypes is None in reindex_entities()
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parents: 5999
diff changeset
   132
        pb = ProgressBar(len(etypes) + 1)
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   133
        pb.update()
0
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   134
    # reindex entities by generating rql queries which set all indexable
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diff changeset
   135
    # attribute to their current value
4816
c02583cb80a9 repair stuff broken by fti handling changes
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parents: 4806
diff changeset
   136
    source = repo.system_source
0
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diff changeset
   137
    for eschema in etypes:
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37668bf302f5 improve massive deletion performance
Alexandre Fayolle <alexandre.fayolle@logilab.fr>
parents: 6624
diff changeset
   138
        rset = session.execute('Any X WHERE X is %s' % eschema)
37668bf302f5 improve massive deletion performance
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parents: 6624
diff changeset
   139
        source.fti_index_entities(session, rset.entities())
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9233a8350420 [test] don't display progress bar when testing checkintegrity
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parents: 4252
diff changeset
   140
        if withpb:
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diff changeset
   141
            pb.update()
0
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parents:
diff changeset
   142
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parents: 1398
diff changeset
   143
380
06e7f2932afe db-check fixes
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parents: 0
diff changeset
   144
def check_schema(schema, session, eids, fix=1):
0
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   145
    """check serialized schema"""
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parents:
diff changeset
   146
    print 'Checking serialized schema'
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diff changeset
   147
    unique_constraints = ('SizeConstraint', 'FormatConstraint',
5523
4bf975c049a6 [db-check] RQLConstraint is not a 'unique' constraint
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parents: 5424
diff changeset
   148
                          'VocabularyConstraint',
0
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   149
                          'RQLVocabularyConstraint')
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3e5a256d17ba [db-check] fix duplicated schema constraint detection
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parents: 4835
diff changeset
   150
    rql = ('Any COUNT(X),RN,SN,ON,CTN GROUPBY RN,SN,ON,CTN ORDERBY 1 '
1398
5fe84a5f7035 rename internal entity types to have CW prefix instead of E
sylvain.thenault@logilab.fr
parents: 1263
diff changeset
   151
           'WHERE X is CWConstraint, R constrained_by X, '
5338
3e5a256d17ba [db-check] fix duplicated schema constraint detection
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4835
diff changeset
   152
           'R relation_type RT, RT name RN, R from_entity ST, ST name SN, '
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parents: 4835
diff changeset
   153
           'R to_entity OT, OT name ON, X cstrtype CT, CT name CTN')
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parents: 4835
diff changeset
   154
    for count, rn, sn, on, cstrname in session.execute(rql):
0
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parents:
diff changeset
   155
        if count == 1:
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parents:
diff changeset
   156
            continue
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parents:
diff changeset
   157
        if cstrname in unique_constraints:
5338
3e5a256d17ba [db-check] fix duplicated schema constraint detection
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parents: 4835
diff changeset
   158
            print "ERROR: got %s %r constraints on relation %s.%s.%s" % (
3e5a256d17ba [db-check] fix duplicated schema constraint detection
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parents: 4835
diff changeset
   159
                count, cstrname, sn, rn, on)
5523
4bf975c049a6 [db-check] RQLConstraint is not a 'unique' constraint
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parents: 5424
diff changeset
   160
            if fix:
4bf975c049a6 [db-check] RQLConstraint is not a 'unique' constraint
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parents: 5424
diff changeset
   161
                print 'dunno how to fix, do it yourself'
0
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parents:
diff changeset
   162
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parents:
diff changeset
   163
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parents: 1398
diff changeset
   164
0
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parents:
diff changeset
   165
def check_text_index(schema, session, eids, fix=1):
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parents:
diff changeset
   166
    """check all entities registered in the text index"""
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parents:
diff changeset
   167
    print 'Checking text index'
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parents:
diff changeset
   168
    cursor = session.system_sql('SELECT uid FROM appears;')
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parents:
diff changeset
   169
    for row in cursor.fetchall():
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diff changeset
   170
        eid = row[0]
5339
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Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 5338
diff changeset
   171
        if not has_eid(session, cursor, eid, eids):
0
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parents:
diff changeset
   172
            msg = '  Entity with eid %s exists in the text index but in no source'
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parents:
diff changeset
   173
            print >> sys.stderr, msg % eid,
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parents:
diff changeset
   174
            if fix:
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diff changeset
   175
                session.system_sql('DELETE FROM appears WHERE uid=%s;' % eid)
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8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
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parents: 6889
diff changeset
   176
            notify_fixed(fix)
0
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parents:
diff changeset
   177
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parents:
diff changeset
   178
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diff changeset
   179
def check_entities(schema, session, eids, fix=1):
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diff changeset
   180
    """check all entities registered in the repo system table"""
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parents:
diff changeset
   181
    print 'Checking entities system table'
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parents:
diff changeset
   182
    cursor = session.system_sql('SELECT eid FROM entities;')
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parents:
diff changeset
   183
    for row in cursor.fetchall():
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parents:
diff changeset
   184
        eid = row[0]
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b83327846450 [db-check] fix unexistent multisource entity detection
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parents: 5338
diff changeset
   185
        if not has_eid(session, cursor, eid, eids):
0
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parents:
diff changeset
   186
            msg = '  Entity with eid %s exists in the system table but in no source'
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parents:
diff changeset
   187
            print >> sys.stderr, msg % eid,
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parents:
diff changeset
   188
            if fix:
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diff changeset
   189
                session.system_sql('DELETE FROM entities WHERE eid=%s;' % eid)
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 6889
diff changeset
   190
            notify_fixed(fix)
7687
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   191
    session.system_sql('INSERT INTO cw_source_relation (eid_from, eid_to) '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   192
                       'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWSource as s '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   193
                       'WHERE s.cw_name=e.asource AND NOT EXISTS(SELECT 1 FROM cw_source_relation as cs '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   194
                       '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   195
    session.system_sql('INSERT INTO is_relation (eid_from, eid_to) '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   196
                       'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWEType as s '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   197
                       'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_relation as cs '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   198
                       '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   199
    session.system_sql('INSERT INTO is_instance_of_relation (eid_from, eid_to) '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   200
                       'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWEType as s '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   201
                       'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_instance_of_relation as cs '
4f5ab60e71cc [c-c db-check] add some sql queries to fix cw_source/is/is_instance relations according to data in the entities table
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7686
diff changeset
   202
                       '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
0
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parents:
diff changeset
   203
    print 'Checking entities tables'
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parents:
diff changeset
   204
    for eschema in schema.entities():
3689
deb13e88e037 follow yams 0.25 api changes to improve performance
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 3374
diff changeset
   205
        if eschema.final:
0
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diff changeset
   206
            continue
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   207
        table = SQL_PREFIX + eschema.type
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   208
        column = SQL_PREFIX +  'eid'
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   209
        cursor = session.system_sql('SELECT %s FROM %s;' % (column, table))
0
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parents:
diff changeset
   210
        for row in cursor.fetchall():
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parents:
diff changeset
   211
            eid = row[0]
5341
0de53140bd29 [db-check] cleanup
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 5340
diff changeset
   212
            # eids is full since we have fetched everything from the entities table,
0
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parents:
diff changeset
   213
            # no need to call has_eid
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parents:
diff changeset
   214
            if not eid in eids or not eids[eid]:
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parents:
diff changeset
   215
                msg = '  Entity with eid %s exists in the %s table but not in the system table'
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parents:
diff changeset
   216
                print >> sys.stderr, msg % (eid, eschema.type),
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parents:
diff changeset
   217
                if fix:
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af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   218
                    session.system_sql('DELETE FROM %s WHERE %s=%s;' % (table, column, eid))
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
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parents: 6889
diff changeset
   219
                notify_fixed(fix)
1802
d628defebc17 delete-trailing-whitespace + some copyright update
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents: 1398
diff changeset
   220
d628defebc17 delete-trailing-whitespace + some copyright update
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents: 1398
diff changeset
   221
0
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
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   222
def bad_related_msg(rtype, target, eid, fix):
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    msg = '  A relation %s with %s eid %s exists but no such entity in sources'
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    print >> sys.stderr, msg % (rtype, target, eid),
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    notify_fixed(fix)
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0
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def check_relations(schema, session, eids, fix=1):
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    """check that eids referenced by relations are registered in the repo system
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    table
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    """
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    print 'Checking relations'
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    for rschema in schema.relations():
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        if rschema.final or rschema in PURE_VIRTUAL_RTYPES:
0
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            continue
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        if rschema.inlined:
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            for subjtype in rschema.subjects():
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                table = SQL_PREFIX + str(subjtype)
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                column = SQL_PREFIX +  str(rschema)
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                sql = 'SELECT %s FROM %s WHERE %s IS NOT NULL;' % (
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                    column, table, column)
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                cursor = session.system_sql(sql)
0
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                for row in cursor.fetchall():
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                    eid = row[0]
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                    if not has_eid(session, cursor, eid, eids):
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                        bad_related_msg(rschema, 'object', eid, fix)
0
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                        if fix:
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                            sql = 'UPDATE %s SET %s=NULL WHERE %s=%s;' % (
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                                table, column, column, eid)
381
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                            session.system_sql(sql)
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            continue
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        try:
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            cursor = session.system_sql('SELECT eid_from FROM %s_relation;' % rschema)
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        except Exception, ex:
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            # usually because table doesn't exist
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            print 'ERROR', ex
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            continue
0
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        for row in cursor.fetchall():
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            eid = row[0]
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            if not has_eid(session, cursor, eid, eids):
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                bad_related_msg(rschema, 'subject', eid, fix)
0
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                if fix:
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                    sql = 'DELETE FROM %s_relation WHERE eid_from=%s;' % (
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                        rschema, eid)
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                    session.system_sql(sql)
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        cursor = session.system_sql('SELECT eid_to FROM %s_relation;' % rschema)
0
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        for row in cursor.fetchall():
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            eid = row[0]
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            if not has_eid(session, cursor, eid, eids):
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                bad_related_msg(rschema, 'object', eid, fix)
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                if fix:
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                    sql = 'DELETE FROM %s_relation WHERE eid_to=%s;' % (
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                        rschema, eid)
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                    session.system_sql(sql)
0
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def check_mandatory_relations(schema, session, eids, fix=1):
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    """check entities missing some mandatory relation"""
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    print 'Checking mandatory relations'
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    for rschema in schema.relations():
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        if rschema.final or rschema in PURE_VIRTUAL_RTYPES:
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            continue
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        smandatory = set()
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        omandatory = set()
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        for rdef in rschema.rdefs.values():
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            if rdef.cardinality[0] in '1+':
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                smandatory.add(rdef.subject)
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            if rdef.cardinality[1] in '1+':
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                omandatory.add(rdef.object)
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        for role, etypes in (('subject', smandatory), ('object', omandatory)):
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            for etype in etypes:
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                if role == 'subject':
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                    rql = 'Any X WHERE NOT X %s Y, X is %s' % (rschema, etype)
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                else:
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                    rql = 'Any X WHERE NOT Y %s X, X is %s' % (rschema, etype)
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                for entity in session.execute(rql).entities():
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                    print >> sys.stderr, '%s #%s is missing mandatory %s relation %s' % (
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                        entity.__regid__, entity.eid, role, rschema),
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                    if fix:
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                        #if entity.cw_describe()['source']['uri'] == 'system': XXX
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                        entity.cw_delete()
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                    notify_fixed(fix)
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   305
def check_mandatory_attributes(schema, session, eids, fix=1):
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    """check for entities stored in the system source missing some mandatory
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    attribute
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    """
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   309
    print 'Checking mandatory attributes'
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    for rschema in schema.relations():
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        if not rschema.final or rschema in VIRTUAL_RTYPES:
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            continue
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        for rdef in rschema.rdefs.values():
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            if rdef.cardinality[0] in '1+':
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                rql = 'Any X WHERE X %s NULL, X is %s, X cw_source S, S name "system"' % (
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                    rschema, rdef.subject)
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                for entity in session.execute(rql).entities():
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                    print >> sys.stderr, '%s #%s is missing mandatory attribute %s' % (
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                        entity.__regid__, entity.eid, rschema),
7036
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                    if fix:
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                        entity.cw_delete()
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                    notify_fixed(fix)
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0
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def check_metadata(schema, session, eids, fix=1):
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    """check entities has required metadata
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    FIXME: rewrite using RQL queries ?
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    """
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    print 'Checking metadata'
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    cursor = session.system_sql("SELECT DISTINCT type FROM entities;")
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    eidcolumn = SQL_PREFIX + 'eid'
0
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   333
    for etype, in cursor.fetchall():
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   334
        table = SQL_PREFIX + etype
1016
26387b836099 use datetime instead of mx.DateTime
sylvain.thenault@logilab.fr
parents: 713
diff changeset
   335
        for rel, default in ( ('creation_date', datetime.now()),
26387b836099 use datetime instead of mx.DateTime
sylvain.thenault@logilab.fr
parents: 713
diff changeset
   336
                              ('modification_date', datetime.now()), ):
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   337
            column = SQL_PREFIX + rel
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   338
            cursor = session.system_sql("SELECT %s FROM %s WHERE %s is NULL"
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   339
                                        % (eidcolumn, table, column))
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   340
            for eid, in cursor.fetchall():
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   341
                msg = '  %s with eid %s has no %s'
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   342
                print >> sys.stderr, msg % (etype, eid, rel),
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   343
                if fix:
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   344
                    session.system_sql("UPDATE %s SET %s=%%(v)s WHERE %s=%s ;"
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   345
                                       % (table, column, eidcolumn, eid),
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   346
                                       {'v': default})
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 6889
diff changeset
   347
                notify_fixed(fix)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   348
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   349
4675
9233a8350420 [test] don't display progress bar when testing checkintegrity
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4252
diff changeset
   350
def check(repo, cnx, checks, reindex, fix, withpb=True):
2476
1294a6bdf3bf application -> instance where it makes sense
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 2248
diff changeset
   351
    """check integrity of instance's repository,
0
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   352
    using given user and password to locally connect to the repository
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   353
    (no running cubicweb server needed)
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   354
    """
7398
26695dd703d8 [repository api] definitly kill usage of word 'pool' to refer to connections set used by a session
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7040
diff changeset
   355
    session = repo._get_session(cnx.sessionid, setcnxset=True)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   356
    # yo, launch checks
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   357
    if checks:
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   358
        eids_cache = {}
7685
902909e5f733 [c-c db-check] disable write security as well so we can delete stuff when needed (e.g. orphan TrInfo)
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7684
diff changeset
   359
        with security_enabled(session, read=False, write=False): # ensure no read security
4835
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   360
            for check in checks:
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   361
                check_func = globals()['check_%s' % check]
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   362
                check_func(repo.schema, session, eids_cache, fix=fix)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   363
        if fix:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   364
            cnx.commit()
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   365
        else:
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   366
            print
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Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   367
        if not fix:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   368
            print 'WARNING: Diagnostic run, nothing has been corrected'
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   369
    if reindex:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   370
        cnx.rollback()
7398
26695dd703d8 [repository api] definitly kill usage of word 'pool' to refer to connections set used by a session
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7040
diff changeset
   371
        session.set_cnxset()
4675
9233a8350420 [test] don't display progress bar when testing checkintegrity
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4252
diff changeset
   372
        reindex_entities(repo.schema, session, withpb=withpb)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   373
        cnx.commit()