server/checkintegrity.py
author Aurelien Campeas <aurelien.campeas@logilab.fr>
Wed, 08 Jan 2014 14:00:31 +0100
changeset 9377 4e0d8f06efbc
parent 9171 be9596750678
child 9463 d62e13eba033
child 9492 c7fc56eecd1a
permissions -rw-r--r--
[js/widgets] fix the InOut widget with modern jQuery versions Several things are done there: * reduction in size and complexity of the code * the unused defaultsettings are removed * the initial `unlinked` list is now correctly populated from python-side * the unit test is adjusted because it tested an irrelevant implementation detail which is no longer true (but the widget of course still handles correctly the linkto information) Tested with ie7, ie9, chromium, firefox. Tested with jQuery 1.6 (cw 3.17.x) and 1.10. Closes #3154531.
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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# copyright 2003-2012 LOGILAB S.A. (Paris, FRANCE), all rights reserved.
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# contact http://www.logilab.fr/ -- mailto:contact@logilab.fr
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#
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# This file is part of CubicWeb.
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#
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# CubicWeb is free software: you can redistribute it and/or modify it under the
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# terms of the GNU Lesser General Public License as published by the Free
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# Software Foundation, either version 2.1 of the License, or (at your option)
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# any later version.
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#
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# CubicWeb is distributed in the hope that it will be useful, but WITHOUT
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# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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# FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more
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# details.
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#
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# You should have received a copy of the GNU Lesser General Public License along
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# with CubicWeb.  If not, see <http://www.gnu.org/licenses/>.
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"""Integrity checking tool for instances:
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* integrity of a CubicWeb repository. Hum actually only the system database is
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  checked.
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"""
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__docformat__ = "restructuredtext en"
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import sys
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from datetime import datetime
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from logilab.common.shellutils import ProgressBar
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from cubicweb.schema import PURE_VIRTUAL_RTYPES, VIRTUAL_RTYPES
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from cubicweb.server.sqlutils import SQL_PREFIX
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def notify_fixed(fix):
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    if fix:
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        sys.stderr.write(' [FIXED]')
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    sys.stderr.write('\n')
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def has_eid(session, sqlcursor, eid, eids):
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    """return true if the eid is a valid eid"""
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    if eid in eids:
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        return eids[eid]
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    sqlcursor.execute('SELECT type, source FROM entities WHERE eid=%s' % eid)
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    try:
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        etype, source = sqlcursor.fetchone()
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    except Exception:
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        eids[eid] = False
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        return False
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    if source and source != 'system':
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        try:
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            # insert eid *and* etype to attempt checking entity has not been
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            # replaced by another subsquently to a restore of an old dump
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            if session.execute('Any X WHERE X is %s, X eid %%(x)s' % etype,
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                               {'x': eid}):
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                eids[eid] = True
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                return True
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        except Exception: # TypeResolverError, Unauthorized...
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            pass
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        eids[eid] = False
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        return False
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    if etype not in session.vreg.schema:
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        eids[eid] = False
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        return False
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    sqlcursor.execute('SELECT * FROM %s%s WHERE %seid=%s' % (SQL_PREFIX, etype,
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                                                             SQL_PREFIX, eid))
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    result = sqlcursor.fetchall()
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    if len(result) == 0:
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        eids[eid] = False
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        return False
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    elif len(result) > 1:
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        msg = ('  More than one entity with eid %s exists in source !\n'
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               '  WARNING : Unable to fix this, do it yourself !\n')
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        sys.stderr.write(msg % eid)
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    eids[eid] = True
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    return True
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# XXX move to yams?
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def etype_fti_containers(eschema, _done=None):
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    if _done is None:
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        _done = set()
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    _done.add(eschema)
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    containers = tuple(eschema.fulltext_containers())
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    if containers:
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        for rschema, target in containers:
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            if target == 'object':
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                targets = rschema.objects(eschema)
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            else:
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                targets = rschema.subjects(eschema)
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            for targeteschema in targets:
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                if targeteschema in _done:
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                    continue
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                _done.add(targeteschema)
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                for container in etype_fti_containers(targeteschema, _done):
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                    yield container
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    else:
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        yield eschema
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def reindex_entities(schema, session, withpb=True, etypes=None):
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    """reindex all entities in the repository"""
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    # deactivate modification_date hook since we don't want them
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    # to be updated due to the reindexation
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    repo = session.repo
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    cursor = session.cnxset['system']
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    dbhelper = session.repo.system_source.dbhelper
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    if not dbhelper.has_fti_table(cursor):
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        print 'no text index table'
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        dbhelper.init_fti(cursor)
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    repo.system_source.do_fti = True  # ensure full-text indexation is activated
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    if etypes is None:
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        print 'Reindexing entities'
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        etypes = set()
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        for eschema in schema.entities():
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diff changeset
   112
            if eschema.final:
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   113
                continue
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   114
            indexable_attrs = tuple(eschema.indexable_attributes()) # generator
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diff changeset
   115
            if not indexable_attrs:
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diff changeset
   116
                continue
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   117
            for container in etype_fti_containers(eschema):
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   118
                etypes.add(container)
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987086484876 [fti migration] test and fix reindexation of some specific entity types
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parents: 5850
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   119
        # clear fti table first
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   120
        session.system_sql('DELETE FROM %s' % dbhelper.fti_table)
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diff changeset
   121
    else:
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   122
        print 'Reindexing entities of type %s' % \
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   123
              ', '.join(sorted(str(e) for e in etypes))
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diff changeset
   124
        # clear fti table first. Use subquery for sql compatibility
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diff changeset
   125
        session.system_sql("DELETE FROM %s WHERE EXISTS(SELECT 1 FROM ENTITIES "
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diff changeset
   126
                           "WHERE eid=%s AND type IN (%s))" % (
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diff changeset
   127
                               dbhelper.fti_table, dbhelper.fti_uid_attr,
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diff changeset
   128
                               ','.join("'%s'" % etype for etype in etypes)))
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9233a8350420 [test] don't display progress bar when testing checkintegrity
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   129
    if withpb:
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   130
        pb = ProgressBar(len(etypes) + 1)
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   131
        pb.update()
0
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   132
    # reindex entities by generating rql queries which set all indexable
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   133
    # attribute to their current value
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c02583cb80a9 repair stuff broken by fti handling changes
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parents: 4806
diff changeset
   134
    source = repo.system_source
0
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diff changeset
   135
    for eschema in etypes:
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11063635c4e4 [fti] allow usage of custom RQL to fetch entities to index (closes #2410509)
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diff changeset
   136
        etype_class = session.vreg['etypes'].etype_class(str(eschema))
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diff changeset
   137
        for fti_rql in etype_class.cw_fti_index_rql_queries(session):
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diff changeset
   138
            rset = session.execute(fti_rql)
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diff changeset
   139
            source.fti_index_entities(session, rset.entities())
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diff changeset
   140
            # clear entity cache to avoid high memory consumption on big tables
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diff changeset
   141
            session.drop_entity_cache()
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parents: 4252
diff changeset
   142
        if withpb:
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diff changeset
   143
            pb.update()
0
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parents:
diff changeset
   144
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parents: 1398
diff changeset
   145
380
06e7f2932afe db-check fixes
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parents: 0
diff changeset
   146
def check_schema(schema, session, eids, fix=1):
0
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diff changeset
   147
    """check serialized schema"""
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   148
    print 'Checking serialized schema'
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diff changeset
   149
    unique_constraints = ('SizeConstraint', 'FormatConstraint',
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4bf975c049a6 [db-check] RQLConstraint is not a 'unique' constraint
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parents: 5424
diff changeset
   150
                          'VocabularyConstraint',
0
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diff changeset
   151
                          'RQLVocabularyConstraint')
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3e5a256d17ba [db-check] fix duplicated schema constraint detection
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parents: 4835
diff changeset
   152
    rql = ('Any COUNT(X),RN,SN,ON,CTN GROUPBY RN,SN,ON,CTN ORDERBY 1 '
1398
5fe84a5f7035 rename internal entity types to have CW prefix instead of E
sylvain.thenault@logilab.fr
parents: 1263
diff changeset
   153
           'WHERE X is CWConstraint, R constrained_by X, '
5338
3e5a256d17ba [db-check] fix duplicated schema constraint detection
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parents: 4835
diff changeset
   154
           'R relation_type RT, RT name RN, R from_entity ST, ST name SN, '
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diff changeset
   155
           'R to_entity OT, OT name ON, X cstrtype CT, CT name CTN')
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parents: 4835
diff changeset
   156
    for count, rn, sn, on, cstrname in session.execute(rql):
0
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diff changeset
   157
        if count == 1:
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diff changeset
   158
            continue
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diff changeset
   159
        if cstrname in unique_constraints:
5338
3e5a256d17ba [db-check] fix duplicated schema constraint detection
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parents: 4835
diff changeset
   160
            print "ERROR: got %s %r constraints on relation %s.%s.%s" % (
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diff changeset
   161
                count, cstrname, sn, rn, on)
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parents: 5424
diff changeset
   162
            if fix:
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parents: 5424
diff changeset
   163
                print 'dunno how to fix, do it yourself'
0
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parents:
diff changeset
   164
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parents:
diff changeset
   165
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parents: 1398
diff changeset
   166
0
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diff changeset
   167
def check_text_index(schema, session, eids, fix=1):
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diff changeset
   168
    """check all entities registered in the text index"""
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   169
    print 'Checking text index'
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d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   170
    msg = '  Entity with eid %s exists in the text index but in no source (autofix will remove from text index)'
0
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diff changeset
   171
    cursor = session.system_sql('SELECT uid FROM appears;')
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diff changeset
   172
    for row in cursor.fetchall():
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diff changeset
   173
        eid = row[0]
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b83327846450 [db-check] fix unexistent multisource entity detection
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parents: 5338
diff changeset
   174
        if not has_eid(session, cursor, eid, eids):
7896
4c954e1e73ef [lint] remove uses of "print >> sys.stderr" (closes #1908571)
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parents: 7815
diff changeset
   175
            sys.stderr.write(msg % eid)
0
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diff changeset
   176
            if fix:
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   177
                session.system_sql('DELETE FROM appears WHERE uid=%s;' % eid)
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8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
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diff changeset
   178
            notify_fixed(fix)
0
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parents:
diff changeset
   179
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parents:
diff changeset
   180
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diff changeset
   181
def check_entities(schema, session, eids, fix=1):
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   182
    """check all entities registered in the repo system table"""
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diff changeset
   183
    print 'Checking entities system table'
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d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   184
    # system table but no source
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be9596750678 Fix two crashes in db-check (closes #3024964)
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parents: 8900
diff changeset
   185
    msg = '  Entity %s with eid %s exists in the system table but in no source (autofix will delete the entity)'
be9596750678 Fix two crashes in db-check (closes #3024964)
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diff changeset
   186
    cursor = session.system_sql('SELECT eid,type FROM entities;')
0
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   187
    for row in cursor.fetchall():
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diff changeset
   188
        eid, etype = row
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b83327846450 [db-check] fix unexistent multisource entity detection
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diff changeset
   189
        if not has_eid(session, cursor, eid, eids):
9171
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diff changeset
   190
            sys.stderr.write(msg % (etype, eid))
0
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diff changeset
   191
            if fix:
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diff changeset
   192
                session.system_sql('DELETE FROM entities WHERE eid=%s;' % eid)
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8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
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parents: 6889
diff changeset
   193
            notify_fixed(fix)
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diff changeset
   194
    # source in entities, but no relation cw_source
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   195
    applcwversion = session.repo.get_versions().get('cubicweb')
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   196
    if applcwversion >= (3,13,1): # entities.asource appeared in 3.13.1
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   197
        cursor = session.system_sql('SELECT e.eid FROM entities as e, cw_CWSource as s '
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diff changeset
   198
                                    'WHERE s.cw_name=e.asource AND '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   199
                                    'NOT EXISTS(SELECT 1 FROM cw_source_relation as cs '
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diff changeset
   200
                                    '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid) '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   201
                                    'ORDER BY e.eid')
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diff changeset
   202
        msg = ('  Entity with eid %s refers to source in entities table, '
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diff changeset
   203
               'but is missing relation cw_source (autofix will create the relation)\n')
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diff changeset
   204
        for row in cursor.fetchall():
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diff changeset
   205
            sys.stderr.write(msg % row[0])
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diff changeset
   206
        if fix:
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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diff changeset
   207
            session.system_sql('INSERT INTO cw_source_relation (eid_from, eid_to) '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   208
                               'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWSource as s '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   209
                               'WHERE s.cw_name=e.asource AND NOT EXISTS(SELECT 1 FROM cw_source_relation as cs '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   210
                               '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   211
            notify_fixed(True)
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   212
    # inconsistencies for 'is'
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   213
    msg = '  %s #%s is missing relation "is" (autofix will create the relation)\n'
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   214
    cursor = session.system_sql('SELECT e.type, e.eid FROM entities as e, cw_CWEType as s '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   215
                                'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_relation as cs '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   216
                                '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid) '
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   217
                                'ORDER BY e.eid')
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parents: 7896
diff changeset
   218
    for row in cursor.fetchall():
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
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parents: 7896
diff changeset
   219
        sys.stderr.write(msg % row)
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   220
    if fix:
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diff changeset
   221
        session.system_sql('INSERT INTO is_relation (eid_from, eid_to) '
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diff changeset
   222
                           'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWEType as s '
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diff changeset
   223
                           'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_relation as cs '
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diff changeset
   224
                           '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
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diff changeset
   225
        notify_fixed(True)
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   226
    # inconsistencies for 'is_instance_of'
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diff changeset
   227
    msg = '  %s #%s is missing relation "is_instance_of" (autofix will create the relation)\n'
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diff changeset
   228
    cursor = session.system_sql('SELECT e.type, e.eid FROM entities as e, cw_CWEType as s '
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diff changeset
   229
                                'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_instance_of_relation as cs '
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diff changeset
   230
                                '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid) '
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diff changeset
   231
                                'ORDER BY e.eid')
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   232
    for row in cursor.fetchall():
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   233
        sys.stderr.write(msg % row)
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diff changeset
   234
    if fix:
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diff changeset
   235
        session.system_sql('INSERT INTO is_instance_of_relation (eid_from, eid_to) '
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diff changeset
   236
                           'SELECT e.eid, s.cw_eid FROM entities as e, cw_CWEType as s '
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diff changeset
   237
                           'WHERE s.cw_name=e.type AND NOT EXISTS(SELECT 1 FROM is_instance_of_relation as cs '
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diff changeset
   238
                           '  WHERE cs.eid_from=e.eid AND cs.eid_to=s.cw_eid)')
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   239
        notify_fixed(True)
0
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    print 'Checking entities tables'
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    msg = '  Entity with eid %s exists in the %s table but not in the system table (autofix will delete the entity)'
0
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   242
    for eschema in schema.entities():
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   243
        if eschema.final:
0
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   244
            continue
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   245
        table = SQL_PREFIX + eschema.type
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diff changeset
   246
        column = SQL_PREFIX +  'eid'
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diff changeset
   247
        cursor = session.system_sql('SELECT %s FROM %s;' % (column, table))
0
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        for row in cursor.fetchall():
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            eid = row[0]
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            # eids is full since we have fetched everything from the entities table,
0
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   251
            # no need to call has_eid
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            if not eid in eids or not eids[eid]:
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4c954e1e73ef [lint] remove uses of "print >> sys.stderr" (closes #1908571)
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                sys.stderr.write(msg % (eid, eschema.type))
0
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                if fix:
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   255
                    session.system_sql('DELETE FROM %s WHERE %s=%s;' % (table, column, eid))
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
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diff changeset
   256
                notify_fixed(fix)
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d628defebc17 delete-trailing-whitespace + some copyright update
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   257
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   258
0
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   259
def bad_related_msg(rtype, target, eid, fix):
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    msg = '  A relation %s with %s eid %s exists but no such entity in sources'
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4c954e1e73ef [lint] remove uses of "print >> sys.stderr" (closes #1908571)
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diff changeset
   261
    sys.stderr.write(msg % (rtype, target, eid))
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diff changeset
   262
    notify_fixed(fix)
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parents: 1398
diff changeset
   263
9171
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parents: 8900
diff changeset
   264
def bad_inlined_msg(rtype, parent_eid, eid, fix):
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diff changeset
   265
    msg = ('  An inlined relation %s from %s to %s exists but the latter '
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   266
           'entity does not exist')
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   267
    sys.stderr.write(msg % (rtype, parent_eid, eid))
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diff changeset
   268
    notify_fixed(fix)
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parents: 8900
diff changeset
   269
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parents: 1398
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   270
0
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def check_relations(schema, session, eids, fix=1):
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    """check that eids referenced by relations are registered in the repo system
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    table
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   274
    """
0
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    print 'Checking relations'
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    for rschema in schema.relations():
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        if rschema.final or rschema.type in PURE_VIRTUAL_RTYPES:
0
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            continue
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        if rschema.inlined:
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            for subjtype in rschema.subjects():
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   281
                table = SQL_PREFIX + str(subjtype)
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diff changeset
   282
                column = SQL_PREFIX +  str(rschema)
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parents: 8900
diff changeset
   283
                sql = 'SELECT cw_eid,%s FROM %s WHERE %s IS NOT NULL;' % (
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diff changeset
   284
                    column, table, column)
380
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parents: 0
diff changeset
   285
                cursor = session.system_sql(sql)
0
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diff changeset
   286
                for row in cursor.fetchall():
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parents: 8900
diff changeset
   287
                    parent_eid, eid = row
5339
b83327846450 [db-check] fix unexistent multisource entity detection
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parents: 5338
diff changeset
   288
                    if not has_eid(session, cursor, eid, eids):
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diff changeset
   289
                        bad_inlined_msg(rschema, parent_eid, eid, fix)
0
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parents:
diff changeset
   290
                        if fix:
3374
d5bd1b659ce8 [db-check] fix sql to fix bad eid referenced by inlined relation
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parents: 2596
diff changeset
   291
                            sql = 'UPDATE %s SET %s=NULL WHERE %s=%s;' % (
d5bd1b659ce8 [db-check] fix sql to fix bad eid referenced by inlined relation
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parents: 2596
diff changeset
   292
                                table, column, column, eid)
381
sylvain.thenault@logilab.fr
parents: 380
diff changeset
   293
                            session.system_sql(sql)
0
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   294
            continue
6185
229006accd26 [c-c db-check] skip error while checking relation, useful when analyzing really broken database (after a migration failure for instance
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parents: 6132
diff changeset
   295
        try:
229006accd26 [c-c db-check] skip error while checking relation, useful when analyzing really broken database (after a migration failure for instance
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parents: 6132
diff changeset
   296
            cursor = session.system_sql('SELECT eid_from FROM %s_relation;' % rschema)
8695
358d8bed9626 [toward-py3k] rewrite to "except AnException as exc:" (part of #2711624)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 8694
diff changeset
   297
        except Exception as ex:
6185
229006accd26 [c-c db-check] skip error while checking relation, useful when analyzing really broken database (after a migration failure for instance
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 6132
diff changeset
   298
            # usually because table doesn't exist
229006accd26 [c-c db-check] skip error while checking relation, useful when analyzing really broken database (after a migration failure for instance
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 6132
diff changeset
   299
            print 'ERROR', ex
229006accd26 [c-c db-check] skip error while checking relation, useful when analyzing really broken database (after a migration failure for instance
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parents: 6132
diff changeset
   300
            continue
0
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parents:
diff changeset
   301
        for row in cursor.fetchall():
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parents:
diff changeset
   302
            eid = row[0]
5339
b83327846450 [db-check] fix unexistent multisource entity detection
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 5338
diff changeset
   303
            if not has_eid(session, cursor, eid, eids):
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af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
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parents: 1161
diff changeset
   304
                bad_related_msg(rschema, 'subject', eid, fix)
0
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parents:
diff changeset
   305
                if fix:
380
06e7f2932afe db-check fixes
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parents: 0
diff changeset
   306
                    sql = 'DELETE FROM %s_relation WHERE eid_from=%s;' % (
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   307
                        rschema, eid)
380
06e7f2932afe db-check fixes
sylvain.thenault@logilab.fr
parents: 0
diff changeset
   308
                    session.system_sql(sql)
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   309
        cursor = session.system_sql('SELECT eid_to FROM %s_relation;' % rschema)
0
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parents:
diff changeset
   310
        for row in cursor.fetchall():
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parents:
diff changeset
   311
            eid = row[0]
5339
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parents: 5338
diff changeset
   312
            if not has_eid(session, cursor, eid, eids):
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parents: 1161
diff changeset
   313
                bad_related_msg(rschema, 'object', eid, fix)
0
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parents:
diff changeset
   314
                if fix:
380
06e7f2932afe db-check fixes
sylvain.thenault@logilab.fr
parents: 0
diff changeset
   315
                    sql = 'DELETE FROM %s_relation WHERE eid_to=%s;' % (
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   316
                        rschema, eid)
380
06e7f2932afe db-check fixes
sylvain.thenault@logilab.fr
parents: 0
diff changeset
   317
                    session.system_sql(sql)
0
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parents:
diff changeset
   318
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parents:
diff changeset
   319
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   320
def check_mandatory_relations(schema, session, eids, fix=1):
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   321
    """check entities missing some mandatory relation"""
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   322
    print 'Checking mandatory relations'
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   323
    msg = '%s #%s is missing mandatory %s relation %s (autofix will delete the entity)'
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   324
    for rschema in schema.relations():
8527
6151b0199bc1 [c-c db-check] don't skip is/is_instance_of mandatory relation to avoid telling two opposite messages when the relation is missing. Closes #2465659
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 8450
diff changeset
   325
        if rschema.final or rschema in PURE_VIRTUAL_RTYPES or rschema in ('is', 'is_instance_of'):
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   326
            continue
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   327
        smandatory = set()
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   328
        omandatory = set()
8696
0bb18407c053 [toward py3k] rewrite dict.keys() and dict.values() (part of #2711624)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 8695
diff changeset
   329
        for rdef in rschema.rdefs.itervalues():
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   330
            if rdef.cardinality[0] in '1+':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   331
                smandatory.add(rdef.subject)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   332
            if rdef.cardinality[1] in '1+':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   333
                omandatory.add(rdef.object)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   334
        for role, etypes in (('subject', smandatory), ('object', omandatory)):
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   335
            for etype in etypes:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   336
                if role == 'subject':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   337
                    rql = 'Any X WHERE NOT X %s Y, X is %s' % (rschema, etype)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   338
                else:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   339
                    rql = 'Any X WHERE NOT Y %s X, X is %s' % (rschema, etype)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   340
                for entity in session.execute(rql).entities():
8900
010a59e12d89 use cw_etype instead of __regid__
Pierre-Yves David <pierre-yves.david@logilab.fr>
parents: 8696
diff changeset
   341
                    sys.stderr.write(msg % (entity.cw_etype, entity.eid, role, rschema))
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   342
                    if fix:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   343
                        #if entity.cw_describe()['source']['uri'] == 'system': XXX
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   344
                        entity.cw_delete() # XXX this is BRUTAL!
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   345
                    notify_fixed(fix)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   346
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   347
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   348
def check_mandatory_attributes(schema, session, eids, fix=1):
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   349
    """check for entities stored in the system source missing some mandatory
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   350
    attribute
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   351
    """
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   352
    print 'Checking mandatory attributes'
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   353
    msg = '%s #%s is missing mandatory attribute %s (autofix will delete the entity)'
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   354
    for rschema in schema.relations():
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   355
        if not rschema.final or rschema in VIRTUAL_RTYPES:
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   356
            continue
8696
0bb18407c053 [toward py3k] rewrite dict.keys() and dict.values() (part of #2711624)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 8695
diff changeset
   357
        for rdef in rschema.rdefs.itervalues():
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   358
            if rdef.cardinality[0] in '1+':
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   359
                rql = 'Any X WHERE X %s NULL, X is %s, X cw_source S, S name "system"' % (
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   360
                    rschema, rdef.subject)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   361
                for entity in session.execute(rql).entities():
8900
010a59e12d89 use cw_etype instead of __regid__
Pierre-Yves David <pierre-yves.david@logilab.fr>
parents: 8696
diff changeset
   362
                    sys.stderr.write(msg % (entity.cw_etype, entity.eid, rschema))
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   363
                    if fix:
7682
07b592a62be3 [c-c db-check] drop some deprecation warning
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7473
diff changeset
   364
                        entity.cw_delete()
7036
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   365
                    notify_fixed(fix)
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   366
63386b35ec69 [c-c db-check] new checks for entities missing a mandatory relation/attribute
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7035
diff changeset
   367
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   368
def check_metadata(schema, session, eids, fix=1):
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   369
    """check entities has required metadata
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   370
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   371
    FIXME: rewrite using RQL queries ?
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   372
    """
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   373
    print 'Checking metadata'
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   374
    cursor = session.system_sql("SELECT DISTINCT type FROM entities;")
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   375
    eidcolumn = SQL_PREFIX + 'eid'
7965
d45c0eb39e72 [server] fix integrity checks that destroy data (closes #1972842)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7896
diff changeset
   376
    msg = '  %s with eid %s has no %s (autofix will set it to now)'
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   377
    for etype, in cursor.fetchall():
9171
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   378
        if etype not in session.vreg.schema:
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   379
            sys.stderr.write('entities table references unknown type %s\n' %
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   380
                             etype)
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   381
            if fix:
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   382
                session.system_sql("DELETE FROM entities WHERE type = %(type)s",
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   383
                                   {'type': etype})
be9596750678 Fix two crashes in db-check (closes #3024964)
Denis Laxalde <denis.laxalde@logilab.fr>
parents: 8900
diff changeset
   384
            continue
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   385
        table = SQL_PREFIX + etype
1016
26387b836099 use datetime instead of mx.DateTime
sylvain.thenault@logilab.fr
parents: 713
diff changeset
   386
        for rel, default in ( ('creation_date', datetime.now()),
26387b836099 use datetime instead of mx.DateTime
sylvain.thenault@logilab.fr
parents: 713
diff changeset
   387
                              ('modification_date', datetime.now()), ):
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   388
            column = SQL_PREFIX + rel
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   389
            cursor = session.system_sql("SELECT %s FROM %s WHERE %s is NULL"
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   390
                                        % (eidcolumn, table, column))
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   391
            for eid, in cursor.fetchall():
7896
4c954e1e73ef [lint] remove uses of "print >> sys.stderr" (closes #1908571)
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 7815
diff changeset
   392
                sys.stderr.write(msg % (etype, eid, rel))
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   393
                if fix:
1251
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   394
                    session.system_sql("UPDATE %s SET %s=%%(v)s WHERE %s=%s ;"
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   395
                                       % (table, column, eidcolumn, eid),
af40e615dc89 introduce a 'cw_' prefix on entity table and column names so we don't conflict with sql or DBMS specific keywords
sylvain.thenault@logilab.fr
parents: 1161
diff changeset
   396
                                       {'v': default})
7035
8d2cf36bd79d [c-c db-check] factorize code by introducing notify_fixed dumb function
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 6889
diff changeset
   397
                notify_fixed(fix)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   398
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   399
4675
9233a8350420 [test] don't display progress bar when testing checkintegrity
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4252
diff changeset
   400
def check(repo, cnx, checks, reindex, fix, withpb=True):
2476
1294a6bdf3bf application -> instance where it makes sense
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 2248
diff changeset
   401
    """check integrity of instance's repository,
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   402
    using given user and password to locally connect to the repository
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   403
    (no running cubicweb server needed)
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   404
    """
7398
26695dd703d8 [repository api] definitly kill usage of word 'pool' to refer to connections set used by a session
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7040
diff changeset
   405
    session = repo._get_session(cnx.sessionid, setcnxset=True)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   406
    # yo, launch checks
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   407
    if checks:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   408
        eids_cache = {}
8562
0d2fb4604265 [session] fix arguments default value and promote usage of security_enabled as session method. Closes #2481820
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 8527
diff changeset
   409
        with session.security_enabled(read=False, write=False): # ensure no read security
4835
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   410
            for check in checks:
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   411
                check_func = globals()['check_%s' % check]
13b0b96d7982 [repo] enhanced security handling: deprecates unsafe_execute, in favor of explicit read/write security control using the `enabled_security` context manager. Also code executed on the repository side is now unsafe by default.
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4834
diff changeset
   412
                check_func(repo.schema, session, eids_cache, fix=fix)
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   413
        if fix:
8578
f6ea4ea63d57 [check integrity] use session consistently
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 8562
diff changeset
   414
            session.commit()
0
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   415
        else:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   416
            print
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   417
        if not fix:
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   418
            print 'WARNING: Diagnostic run, nothing has been corrected'
b97547f5f1fa Showtime !
Adrien Di Mascio <Adrien.DiMascio@logilab.fr>
parents:
diff changeset
   419
    if reindex:
8578
f6ea4ea63d57 [check integrity] use session consistently
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 8562
diff changeset
   420
        session.rollback()
7398
26695dd703d8 [repository api] definitly kill usage of word 'pool' to refer to connections set used by a session
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 7040
diff changeset
   421
        session.set_cnxset()
4675
9233a8350420 [test] don't display progress bar when testing checkintegrity
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4252
diff changeset
   422
        reindex_entities(repo.schema, session, withpb=withpb)
8578
f6ea4ea63d57 [check integrity] use session consistently
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 8562
diff changeset
   423
        session.commit()