devtools/dataimport.py
author Sylvain Thénault <sylvain.thenault@logilab.fr>
Wed, 17 Feb 2010 16:42:52 +0100
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# -*- coding: utf-8 -*-
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"""This module provides tools to import tabular data.
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:organization: Logilab
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:copyright: 2001-2010 LOGILAB S.A. (Paris, FRANCE), license is LGPL v2.
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:contact: http://www.logilab.fr/ -- mailto:contact@logilab.fr
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:license: GNU Lesser General Public License, v2.1 - http://www.gnu.org/licenses
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Example of use (run this with `cubicweb-ctl shell instance import-script.py`):
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.. sourcecode:: python
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  from cubicweb.devtools.dataimport import *
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  # define data generators
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  GENERATORS = []
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  USERS = [('Prenom', 'firstname', ()),
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           ('Nom', 'surname', ()),
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           ('Identifiant', 'login', ()),
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           ]
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  def gen_users(ctl):
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      for row in ctl.get_data('utilisateurs'):
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          entity = mk_entity(row, USERS)
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          entity['upassword'] = u'motdepasse'
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          ctl.check('login', entity['login'], None)
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          ctl.store.add('CWUser', entity)
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          email = {'address': row['email']}
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          ctl.store.add('EmailAddress', email)
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          ctl.store.relate(entity['eid'], 'use_email', email['eid'])
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          ctl.store.rql('SET U in_group G WHERE G name "users", U eid %(x)s', {'x':entity['eid']})
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  CHK = [('login', check_doubles, 'Utilisateurs Login',
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          'Deux utilisateurs ne devraient pas avoir le même login.'),
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         ]
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  GENERATORS.append( (gen_users, CHK) )
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  # create controller
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  ctl = CWImportController(RQLObjectStore())
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  ctl.askerror = 1
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  ctl.generators = GENERATORS
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  ctl.store._checkpoint = checkpoint
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  ctl.store._rql = rql
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  ctl.data['utilisateurs'] = lazytable(utf8csvreader(open('users.csv')))
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  # run
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  ctl.run()
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  sys.exit(0)
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.. BUG fichier à une colonne pose un problème de parsing
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.. TODO rollback()
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"""
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__docformat__ = "restructuredtext en"
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import sys
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import csv
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import traceback
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import os.path as osp
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from StringIO import StringIO
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from logilab.common import shellutils
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from logilab.common.deprecation import deprecated
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def ucsvreader_pb(filepath, encoding='utf-8', separator=',', quote='"',
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                  skipfirst=False, withpb=True):
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    """same as ucsvreader but a progress bar is displayed as we iter on rows"""
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    if not osp.exists(filepath):
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        raise Exception("file doesn't exists: %s" % filepath)
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    rowcount = int(shellutils.Execute('wc -l "%s"' % filepath).out.strip().split()[0])
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    if skipfirst:
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        rowcount -= 1
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    if withpb:
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        pb = shellutils.ProgressBar(rowcount, 50)
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    for urow in ucsvreader(file(filepath), encoding, separator, quote, skipfirst):
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        yield urow
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        if withpb:
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            pb.update()
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    print ' %s rows imported' % rowcount
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def ucsvreader(stream, encoding='utf-8', separator=',', quote='"',
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               skipfirst=False):
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    """A csv reader that accepts files with any encoding and outputs unicode
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    strings
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    """
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    it = iter(csv.reader(stream, delimiter=separator, quotechar=quote))
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    if skipfirst:
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        it.next()
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    for row in it:
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        yield [item.decode(encoding) for item in row]
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utf8csvreader = deprecated('use ucsvreader instead')(ucsvreader)
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def commit_every(nbit, store, it):
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    for i, x in enumerate(it):
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        yield x
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        if nbit is not None and i % nbit:
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            store.checkpoint()
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    if nbit is not None:
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        store.checkpoint()
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def lazytable(reader):
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    """The first row is taken to be the header of the table and
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    used to output a dict for each row of data.
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    >>> data = lazytable(utf8csvreader(open(filename)))
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    """
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    header = reader.next()
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    for row in reader:
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        yield dict(zip(header, row))
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def mk_entity(row, map):
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    """Return a dict made from sanitized mapped values.
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    ValidationError can be raised on unexpected values found in checkers
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    >>> row = {'myname': u'dupont'}
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    >>> map = [('myname', u'name', (capitalize_if_unicase,))]
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    >>> mk_entity(row, map)
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    {'name': u'Dupont'}
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    >>> row = {'myname': u'dupont', 'optname': u''}
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    >>> map = [('myname', u'name', (capitalize_if_unicase,)),
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    ...        ('optname', u'MARKER', (optional,))]
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    >>> mk_entity(row, map)
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    {'name': u'Dupont'}
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    """
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    res = {}
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    assert isinstance(row, dict)
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    assert isinstance(map, list)
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    for src, dest, funcs in map:
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        assert not (required in funcs and optional in funcs), "optional and required checks are exclusive"
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        res[dest] = row[src]
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        try:
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            for func in funcs:
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                res[dest] = func(res[dest])
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            if res[dest] is None:
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                raise AssertionError('undetermined value')
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        except AssertionError, err:
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            if optional in funcs:
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                # Forget this field if exception is coming from optional function
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               del res[dest]
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            else:
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               raise AssertionError('error with "%s" field: %s' % (src, err))
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    return res
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# user interactions ############################################################
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def tell(msg):
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    print msg
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def confirm(question):
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    """A confirm function that asks for yes/no/abort and exits on abort."""
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    answer = shellutils.ASK.ask(question, ('Y','n','abort'), 'Y')
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    if answer == 'abort':
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        sys.exit(1)
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    return answer == 'Y'
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class catch_error(object):
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    """Helper for @contextmanager decorator."""
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    def __init__(self, ctl, key='unexpected error', msg=None):
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        self.ctl = ctl
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        self.key = key
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        self.msg = msg
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    def __enter__(self):
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        return self
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    def __exit__(self, type, value, traceback):
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        if type is not None:
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            if issubclass(type, (KeyboardInterrupt, SystemExit)):
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                return # re-raise
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            if self.ctl.catcherrors:
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                self.ctl.record_error(self.key, None, type, value, traceback)
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                return True # silent
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# base sanitizing functions ####################################################
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def capitalize_if_unicase(txt):
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    if txt.isupper() or txt.islower():
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        return txt.capitalize()
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    return txt
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def uppercase(txt):
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    return txt.upper()
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def lowercase(txt):
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    return txt.lower()
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def no_space(txt):
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    return txt.replace(' ','')
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def no_uspace(txt):
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    return txt.replace(u'\xa0','')
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def no_dash(txt):
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    return txt.replace('-','')
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def decimal(value):
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    """cast to float but with comma replacement
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    We take care of some locale format as replacing ',' by '.'"""
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    value = value.replace(',', '.')
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    try:
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        return float(value)
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    except Exception, err:
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        raise AssertionError(err)
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def integer(value):
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    try:
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        return int(value)
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    except Exception, err:
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        raise AssertionError(err)
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def strip(txt):
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    return txt.strip()
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def yesno(value):
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    """simple heuristic that returns boolean value
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    >>> yesno("Yes")
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    True
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    >>> yesno("oui")
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    True
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    >>> yesno("1")
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    True
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    >>> yesno("11")
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    True
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    >>> yesno("")
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    False
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    >>> yesno("Non")
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    False
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    >>> yesno("blablabla")
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    False
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    """
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    if value:
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        return value.lower()[0] in 'yo1'
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    return False
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def isalpha(value):
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    if value.isalpha():
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        return value
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    raise AssertionError("not all characters in the string alphabetic")
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def optional(value):
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    """validation error will not been raised if you add this checker in chain"""
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    return value
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def required(value):
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    """raise AssertionError is value is empty
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    This check should be often found in last position in the chain.
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    """
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    if bool(value):
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        return value
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    raise AssertionError("required")
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@deprecated('use required(value)')
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def nonempty(value):
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    return required(value)
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@deprecated('use integer(value)')
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def alldigits(txt):
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    if txt.isdigit():
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        return txt
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    else:
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        return u''
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# base integrity checking functions ############################################
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def check_doubles(buckets):
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    """Extract the keys that have more than one item in their bucket."""
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    return [(key, len(value)) for key,value in buckets.items() if len(value) > 1]
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def check_doubles_not_none(buckets):
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    """Extract the keys that have more than one item in their bucket."""
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    return [(key, len(value)) for key,value in buckets.items() if key is not None and len(value) > 1]
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# object stores #################################################################
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class ObjectStore(object):
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    """Store objects in memory for *faster* validation (development mode)
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    But it will not enforce the constraints of the schema and hence will miss some problems
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    >>> store = ObjectStore()
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    >>> user = {'login': 'johndoe'}
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    >>> store.add('CWUser', user)
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    >>> group = {'name': 'unknown'}
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    >>> store.add('CWUser', group)
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    >>> store.relate(user['eid'], 'in_group', group['eid'])
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    """
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    def __init__(self):
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        self.items = []
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        self.eids = {}
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        self.types = {}
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        self.relations = set()
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        self.indexes = {}
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        self._rql = None
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        self._checkpoint = None
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    def _put(self, type, item):
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        self.items.append(item)
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        return len(self.items) - 1
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    def add(self, type, item):
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        assert isinstance(item, dict), 'item is not a dict but a %s' % type(item)
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        eid = item['eid'] = self._put(type, item)
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        self.eids[eid] = item
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        self.types.setdefault(type, []).append(eid)
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    def relate(self, eid_from, rtype, eid_to):
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        """Add new relation (reverse type support is available)
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        >>> 1,2 = eid_from, eid_to
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        >>> self.relate(eid_from, 'in_group', eid_to)
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        1, 'in_group', 2
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        >>> self.relate(eid_from, 'reverse_in_group', eid_to)
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        2, 'in_group', 1
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        """
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        if rtype.startswith('reverse_'):
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            eid_from, eid_to = eid_to, eid_from
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            rtype = rtype[8:]
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        relation = eid_from, rtype, eid_to
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        self.relations.add(relation)
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        return relation
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    def build_index(self, name, type, func=None):
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        index = {}
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        if func is None or not callable(func):
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            func = lambda x: x['eid']
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        for eid in self.types[type]:
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            index.setdefault(func(self.eids[eid]), []).append(eid)
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        assert index, "new index '%s' cannot be empty" % name
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        self.indexes[name] = index
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    def build_rqlindex(self, name, type, key, rql, rql_params=False, func=None):
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        """build an index by rql query
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        rql should return eid in first column
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        ctl.store.build_index('index_name', 'users', 'login', 'Any U WHERE U is CWUser')
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        """
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        rset = self.rql(rql, rql_params or {})
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        for entity in rset.entities():
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            getattr(entity, key) # autopopulate entity with key attribute
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            self.eids[entity.eid] = dict(entity)
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            if entity.eid not in self.types.setdefault(type, []):
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                self.types[type].append(entity.eid)
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        assert self.types[type], "new index type '%s' cannot be empty (0 record found)" % type
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   356
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   357
        # Build index with specified key
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   358
        func = lambda x: x[key]
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   359
        self.build_index(name, type, func)
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diff changeset
   360
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   361
    @deprecated('get_many() deprecated. Use fetch() instead')
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   362
    def get_many(self, name, key):
4527
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diff changeset
   363
        return self.fetch(name, key, unique=False)
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diff changeset
   364
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diff changeset
   365
    @deprecated('get_one() deprecated. Use fetch(..., unique=True) instead')
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   366
    def get_one(self, name, key):
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   367
        return self.fetch(name, key, unique=True)
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diff changeset
   368
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diff changeset
   369
    def fetch(self, name, key, unique=False, decorator=None):
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diff changeset
   370
        """
67ab70e98488 [R] devtools: improve default data import mechanism
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parents: 4252
diff changeset
   371
            decorator is a callable method or an iterator of callable methods (usually a lambda function)
67ab70e98488 [R] devtools: improve default data import mechanism
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diff changeset
   372
            decorator=lambda x: x[:1] (first value is returned)
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diff changeset
   373
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diff changeset
   374
            We can use validation check function available in _entity
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   375
        """
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diff changeset
   376
        eids = self.indexes[name].get(key, [])
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   377
        if decorator is not None:
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diff changeset
   378
            if not hasattr(decorator, '__iter__'):
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diff changeset
   379
                decorator = (decorator,)
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diff changeset
   380
            for f in decorator:
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diff changeset
   381
                eids = f(eids)
67ab70e98488 [R] devtools: improve default data import mechanism
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diff changeset
   382
        if unique:
67ab70e98488 [R] devtools: improve default data import mechanism
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diff changeset
   383
            assert len(eids) == 1, u'expected a single one value for key "%s" in index "%s". Got %i' % (key, name, len(eids))
67ab70e98488 [R] devtools: improve default data import mechanism
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parents: 4252
diff changeset
   384
            eids = eids[0] # FIXME maybe it's better to keep an iterator here ?
67ab70e98488 [R] devtools: improve default data import mechanism
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diff changeset
   385
        return eids
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   386
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   387
    def find(self, type, key, value):
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diff changeset
   388
        for idx in self.types[type]:
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diff changeset
   389
            item = self.items[idx]
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parents:
diff changeset
   390
            if item[key] == value:
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parents:
diff changeset
   391
                yield item
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diff changeset
   392
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diff changeset
   393
    def rql(self, *args):
67ab70e98488 [R] devtools: improve default data import mechanism
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diff changeset
   394
        if self._rql is not None:
67ab70e98488 [R] devtools: improve default data import mechanism
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parents: 4252
diff changeset
   395
            return self._rql(*args)
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parents: 4252
diff changeset
   396
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diff changeset
   397
    def checkpoint(self):
4136
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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diff changeset
   398
        pass
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diff changeset
   399
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diff changeset
   400
3dfe497e5afa F tools to import data
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diff changeset
   401
class RQLObjectStore(ObjectStore):
4527
67ab70e98488 [R] devtools: improve default data import mechanism
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diff changeset
   402
    """ObjectStore that works with an actual RQL repository (production mode)"""
4136
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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diff changeset
   403
    _rql = None # bw compat
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   404
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   405
    def __init__(self, session=None, checkpoint=None):
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   406
        ObjectStore.__init__(self)
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   407
        if session is not None:
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 3486
diff changeset
   408
            if not hasattr(session, 'set_pool'):
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   409
                # connection
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   410
                cnx = session
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   411
                session = session.request()
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   412
                session.set_pool = lambda : None
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   413
                checkpoint = checkpoint or cnx.commit
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   414
            self.session = session
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   415
            self.checkpoint = checkpoint or session.commit
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   416
        elif checkpoint is not None:
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   417
            self.checkpoint = checkpoint
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   418
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   419
    def rql(self, *args):
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   420
        if self._rql is not None:
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   421
            return self._rql(*args)
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   422
        self.session.set_pool()
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   423
        return self.session.execute(*args)
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   424
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   425
    def create_entity(self, *args, **kwargs):
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 3486
diff changeset
   426
        self.session.set_pool()
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   427
        entity = self.session.create_entity(*args, **kwargs)
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
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parents: 3486
diff changeset
   428
        self.eids[entity.eid] = entity
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 3486
diff changeset
   429
        self.types.setdefault(args[0], []).append(entity.eid)
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 3486
diff changeset
   430
        return entity
2974
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diff changeset
   431
3dfe497e5afa F tools to import data
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diff changeset
   432
    def _put(self, type, item):
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   433
        query = ('INSERT %s X: ' % type) + ', '.join(['X %s %%(%s)s' % (key,key) for key in item])
3dfe497e5afa F tools to import data
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parents:
diff changeset
   434
        return self.rql(query, item)[0][0]
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parents:
diff changeset
   435
3003
2944ee420dca R [dataimport] rename uid to eid
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 2974
diff changeset
   436
    def relate(self, eid_from, rtype, eid_to):
4527
67ab70e98488 [R] devtools: improve default data import mechanism
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parents: 4252
diff changeset
   437
        # if reverse relation is found, eids are exchanged
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   438
        eid_from, rtype, eid_to = super(RQLObjectStore, self).relate(eid_from, rtype, eid_to)
4136
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 3486
diff changeset
   439
        self.rql('SET X %s Y WHERE X eid %%(x)s, Y eid %%(y)s' % rtype,
47060a66c97f dataimport refactoring / improvments, keeping bw compat (for now)
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 3486
diff changeset
   440
                  {'x': int(eid_from), 'y': int(eid_to)}, ('x', 'y'))
2974
3dfe497e5afa F tools to import data
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parents:
diff changeset
   441
4152
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   442
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   443
# the import controller ########################################################
2974
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   444
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   445
class CWImportController(object):
3dfe497e5afa F tools to import data
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parents:
diff changeset
   446
    """Controller of the data import process.
3dfe497e5afa F tools to import data
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parents:
diff changeset
   447
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   448
    >>> ctl = CWImportController(store)
3dfe497e5afa F tools to import data
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parents:
diff changeset
   449
    >>> ctl.generators = list_of_data_generators
3dfe497e5afa F tools to import data
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parents:
diff changeset
   450
    >>> ctl.data = dict_of_data_tables
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parents:
diff changeset
   451
    >>> ctl.run()
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parents:
diff changeset
   452
    """
3dfe497e5afa F tools to import data
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parents:
diff changeset
   453
4527
67ab70e98488 [R] devtools: improve default data import mechanism
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diff changeset
   454
    def __init__(self, store, askerror=0, catcherrors=None, tell=tell,
4152
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   455
                 commitevery=50):
2974
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   456
        self.store = store
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   457
        self.generators = None
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   458
        self.data = {}
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   459
        self.errors = None
4152
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   460
        self.askerror = askerror
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   461
        if  catcherrors is None:
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   462
            catcherrors = askerror
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   463
        self.catcherrors = catcherrors
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   464
        self.commitevery = commitevery # set to None to do a single commit
3029
bc573d5fb5b7 F [devtools] by default dataimport prints message on stdout
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 3003
diff changeset
   465
        self._tell = tell
2974
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   466
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   467
    def check(self, type, key, value):
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   468
        self._checks.setdefault(type, {}).setdefault(key, []).append(value)
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   469
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   470
    def check_map(self, entity, key, map, default):
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   471
        try:
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   472
            entity[key] = map[entity[key]]
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   473
        except KeyError:
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   474
            self.check(key, entity[key], None)
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   475
            entity[key] = default
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   476
4152
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   477
    def record_error(self, key, msg=None, type=None, value=None, tb=None):
4186
ca7e526b07b6 import cleanup, check data file exists
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4173
diff changeset
   478
        tmp = StringIO()
4152
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   479
        if type is None:
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   480
            traceback.print_exc(file=tmp)
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   481
        else:
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   482
            traceback.print_exception(type, value, tb, file=tmp)
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   483
        print tmp.getvalue()
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   484
        # use a list to avoid counting a <nb lines> errors instead of one
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   485
        errorlog = self.errors.setdefault(key, [])
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   486
        if msg is None:
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   487
            errorlog.append(tmp.getvalue().splitlines())
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   488
        else:
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   489
            errorlog.append( (msg, tmp.getvalue().splitlines()) )
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   490
2974
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   491
    def run(self):
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   492
        self.errors = {}
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   493
        for func, checks in self.generators:
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   494
            self._checks = {}
4152
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   495
            func_name = func.__name__[4:]  # XXX
4527
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   496
            self.tell("Import '%s'..." % func_name)
2974
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   497
            try:
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   498
                func(self)
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   499
            except:
4152
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   500
                if self.catcherrors:
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   501
                    self.record_error(func_name, 'While calling %s' % func.__name__)
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   502
                else:
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   503
                    raise
2974
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   504
            for key, func, title, help in checks:
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   505
                buckets = self._checks.get(key)
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   506
                if buckets:
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   507
                    err = func(buckets)
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   508
                    if err:
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   509
                        self.errors[title] = (help, err)
4152
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   510
        self.store.checkpoint()
4527
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   511
        nberrors = sum(len(err[1]) for err in self.errors.values())
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   512
        self.tell('\nImport completed: %i entities, %i types, %i relations and %i errors'
3003
2944ee420dca R [dataimport] rename uid to eid
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents: 2974
diff changeset
   513
                  % (len(self.store.eids), len(self.store.types),
4527
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   514
                     len(self.store.relations), nberrors))
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   515
        if self.errors:
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   516
            if self.askerror==2 or (self.askerror and confirm('Display errors ?')):
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   517
                from pprint import pformat
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   518
                for errkey, error in self.errors.items():
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   519
                    self.tell("\n%s (%s): %d\n" % (error[0], errkey, len(error[1])))
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   520
                    self.tell(pformat(sorted(error[1])))
2974
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   521
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   522
    def get_data(self, key):
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   523
        return self.data.get(key)
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   524
4527
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   525
    def index(self, name, key, value, unique=False):
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   526
        """create a new index
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   527
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   528
        If unique is set to True, only first occurence will be kept not the following ones
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   529
        """
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   530
        if unique:
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   531
            try:
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   532
                if value in self.store.indexes[name][key]:
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   533
                    return
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   534
            except KeyError:
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   535
                # we're sure that one is the first occurence; so continue...
67ab70e98488 [R] devtools: improve default data import mechanism
Julien Jehannet <julien.jehannet@logilab.fr>
parents: 4252
diff changeset
   536
                pass
2974
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   537
        self.store.indexes.setdefault(name, {}).setdefault(key, []).append(value)
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   538
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   539
    def tell(self, msg):
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   540
        self._tell(msg)
3dfe497e5afa F tools to import data
Nicolas Chauvat <nicolas.chauvat@logilab.fr>
parents:
diff changeset
   541
4152
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   542
    def iter_and_commit(self, datakey):
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   543
        """iter rows, triggering commit every self.commitevery iterations"""
30fd1229137d new catch_error context manager, nicer controller __init__ and new iter_and_commit(datakey) method
Sylvain Thénault <sylvain.thenault@logilab.fr>
parents: 4140
diff changeset
   544
        return commit_every(self.commitevery, self.store, self.get_data(datakey))